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Containers to build and run different versions of GranFilm

Constatns in this file

MY_VERSION = the version of GranFilm you whish to build 
MY_REPO    = the folder that contains your source code.
MY_TEMP    = folder to build and run GranFilm

Loacally build docker image

[~/]$ cd MY_VERSION
[~/MY_VERSION]$ docker build -t granfilm-gcc9.4.0-libs .



[~/MY_VERSION]$ docker build -t granfilmpy .

Different ways to run the image

Locally run docker image

$ [~/]$ cd MY_REPO 
$ [~/MY_REPO]$ docker run -it --rm granfilm-gcc9.4.0-libs:latest

Locally run docker image

$ [~/MY_REPO]$ docker run -it --rm -v /home/sunnivin/Documents/code_work/GranFilm/GranFilm_Containers/2.0/test-access:/usr/lib64/ \
    granfilm-gcc9.4.0-libs

Mounting in GranFilm and Run folder

First attempt

[~/MY_TEMP]$ docker run -it --rm \
-v /home/sunnivin/Documents/code_work/GranFilm/granfilm:/granfilm \
-v /home/sunnivin/Documents/code_work/GranFilm/GranFilm_BuildRun/Run:/run \
granfilm-gcc9.4.0-libs:latest


docker run -it --rm \
-v /home/sunnivin/Documents/code_work/GranFilm/granfilm:/root/granfilm \
-v /home/sunnivin/Documents/code_work/GranFilm/GranFilm_BuildRun/Run:/root/run \
-v /home/sunnivin/Documents/code_work/GranFilm/granfilmpy:/root/granfilmpy \
granfilm-gcc9.4.0-libs:latest

docker run -it --rm \
-v /home/sunnivin/Documents/code_work/GranFilm/granfilm:/root/granfilm \
-v /home/sunnivin/Documents/code_work/GranFilm/GranFilm_BuildRun/Run:/root/run \
-v /home/sunnivin/Documents/code_work/GranFilm/granfilmpy:/root/granfilmpy \
granfilm:latest


docker run -it --rm \
-p 8888:8888 \
-v /home/sunnivin/Documents/code_work/GranFilm/granfilm:/root/granfilm \
-v /home/sunnivin/Documents/code_work/GranFilm/GranFilm_BuildRun/Run:/root/run \
-v /home/sunnivin/Documents/code_work/GranFilm/granfilmpy:/root/granfilmpy \
granfilmpy:latest

Second attempt

[~/MY_TEMP]$ docker run -it --rm \
-v /home/sunnivin/Documents/code_work/GranFilm/granfilm:/home/jovyan/granfilm \
-v /home/sunnivin/Documents/code_work/GranFilm/GranFilm_BuildRun/Run:/home/jovyan/run \
-v /home/sunnivin/Documents/code_work/GranFilm/granfilmpy:/home/jovyan/granfilmpy \
binder-granfilmpy:latest

How to run GranFilm inside the container and save the output

Building the neccessary libaries

OpenBLAS

root@443890d41889:/usr/src/libs/OpenBLAS# make PREFIX=/usr/local/lib/OpenBLAS/9.4.0 install

Testing jupyter notebooks

root@060096e4efb3:/granfilmpy# cd ../root/granfilmpy/doc/
root@698ba9a6229f:~/granfilmpy/doc# jupyter notebook --port=8888 --no-browser --ip=0.0.0.0 --allow-root



docker run -it --rm \
-p 8888:8888 \
-v /home/sunnivin/Documents/code_work/GranFilm/GranFilm_Containers/granfilmpy/GranFilm/granfilm:/root/granfilm \
-v /home/sunnivin/Documents/code_work/GranFilm/GranFilm_BuildRun/Run:/root/run \
-v /home/sunnivin/Documents/code_work/GranFilm/GranFilm_Containers/granfilmpy/GranFilm/granfilmpy:/root/granfilmpy \
granfilmpy:latest

Paper writing

Working with the old notebook of Ingve to match and make the first paper of spherical and coated particles

docker run -it --rm \
-p 8888:8888 \
-v /home/sunnivin/GranFilm_tests/granfilm:/root/granfilm \
-v /home/sunnivin/GranFilm_tests/paper2013-02:/root/paper2013-02 \
-v /home/sunnivin/GranFilm_tests/granfilmpy:/root/granfilmpy \
granfilm/paper/o3

Start the jupyter server:

root@698ba9a6229f:~/granfilmpy/doc# jupyter notebook --port=8888 --no-browser --ip=0.0.0.0 --allow-root

Where to place the granfilmpy folder inside the container

GRANFILMPY_ROOT = /root/granfilmpy/src

Container information:

Remember that the container granfilm-gcc-9.4 and granfilmpy is mainly used for development. granfilm-binder containes the executable in the shell.