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executable file
·230 lines (193 loc) · 11 KB
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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Fri Aug 20 17:05:58 2021
@author: mike_ubuntu
"""
from typing import Union, List
import numpy as np
from sklearn.linear_model import LinearRegression
from epde.structure.encoding import Chromosome
from epde.structure.main_structures import Term, Equation, SoEq
from functools import singledispatch
def float_convertable(obj):
try:
float(obj)
return True
except (ValueError, TypeError) as e:
return False
@singledispatch
def translate_equation(text_form, pool, all_vars):
raise NotImplementedError(f'Equation shall be translated from {type(text_form)}')
@translate_equation.register
def _(text_form : str, pool, all_vars: List[str], use_pic: bool = False):
parsed_text_form = parse_equation_str(text_form)
term_list = []
weights = np.empty(len(parsed_text_form) - 1)
max_factors = 0
for idx, term in enumerate(parsed_text_form):
if (any([not float_convertable(elem) for elem in term]) and
any([float_convertable(elem) for elem in term])):
factors = [parse_factor(factor, pool, all_vars) for factor in term[1:]]
if len(factors) > max_factors:
max_factors = len(factors)
term_list.append(Term(pool, passed_term=factors, collapse_powers=False))
weights[idx] = float(term[0])
elif float_convertable(term[0]) and len(term) == 1:
weights[idx] = float(term[0])
elif all([not float_convertable(elem) for elem in term]):
factors = [parse_factor(factor, pool, all_vars) for factor in term]
if len(factors) > max_factors:
max_factors = len(factors)
term_list.append(Term(pool, passed_term=factors, collapse_powers=False))
metaparameters={'terms_number': {'optimizable': False, 'value': len(term_list)},
'max_factors_in_term': {'optimizable': False, 'value': max_factors}}
for var_key in all_vars:
metaparameters[('sparsity', var_key)] = {'optimizable': True, 'value': 0.}
equation = Equation(pool=pool, basic_structure=term_list, var_to_explain = all_vars[0],
metaparameters=metaparameters)
equation.target_idx = len(term_list) - 1
equation.weights_internal = weights
equation.weights_final = weights
system = SoEq(pool = pool, metaparameters=metaparameters)
system.use_default_multiobjective_function(use_pic = use_pic)
system.create(passed_equations = [equation,])
# structure = {'u' : equation}
# system.vals = Chromosome(structure, params={key: val for key, val in system.metaparameters.items()
# if val['optimizable']})
return system
@translate_equation.register
def _(text_form : dict, pool, all_vars: List[str], use_pic: bool = False):
equations = []
for var_key, eq_text_form in text_form.items():
parsed_text_form = parse_equation_str(eq_text_form)
term_list = []
weights = np.empty(len(parsed_text_form) - 1)
max_factors = 0
for idx, term in enumerate(parsed_text_form):
if (any([not float_convertable(elem) for elem in term]) and
any([float_convertable(elem) for elem in term])):
factors = [parse_factor(factor, pool, all_vars) for factor in term[1:]]
if len(factors) > max_factors:
max_factors = len(factors)
term_list.append(Term(pool, passed_term=factors, collapse_powers=False))
weights[idx] = float(term[0])
elif float_convertable(term[0]) and len(term) == 1:
weights[idx] = float(term[0])
elif all([not float_convertable(elem) for elem in term]):
factors = [parse_factor(factor, pool, all_vars) for factor in term]
if len(factors) > max_factors:
max_factors = len(factors)
term_list.append(Term(pool, passed_term=factors, collapse_powers=False))
metaparameters={'terms_number': {'optimizable': False, 'value': len(term_list)},
'max_factors_in_term': {'optimizable': False, 'value': max_factors}}
for var_key in all_vars:
metaparameters[('sparsity', var_key)] = {'optimizable': True, 'value': 0.}
equation = Equation(pool = pool, basic_structure = term_list, var_to_explain = var_key,
metaparameters = metaparameters)
equation.target_idx = len(term_list) - 1
equation.weights_internal = weights
equation.weights_final = weights
equations.append(equation)
# structure = {'u' : equation}
system = SoEq(pool = pool, metaparameters=metaparameters)
system.use_default_multiobjective_function(use_pic = use_pic)
system.create(passed_equations = equations)
# system.vals = Chromosome(structure, params={key: val for key, val in system.metaparameters.items()
# if val['optimizable']})
return system
def parse_equation_str(text_form):
'''
Example input: '0.0 * d^3u/dx2^3{power: 1} * du/dx2{power: 1} + 0.0 * d^3u/dx1^3{power: 1} +
0.015167810810763344 * d^2u/dx1^2{power: 1} + 0.0 * d^3u/dx2^3{power: 1} + 0.0 * du/dx2{power: 1} +
4.261009307104081e-07 = d^2u/dx1^2{power: 1} * du/dx1{power: 1}'
'''
left, right = text_form.split(' = ')
left = left.split(' + ')
for idx in range(len(left)):
left[idx] = left[idx].split(' * ')
right = right.split(' * ')
return left + [right,]
def parse_term_str(term_form):
pass
def parse_factor(factor_form, pool, all_vars): # В проект: работы по обрезке сетки, на которых нулевые значения производных
# print(factor_form)
label_str, params_str = tuple(factor_form.split('{'))
if '}' not in params_str:
raise ValueError('Missing brackets, denoting parameters part of factor text form. Possible explanation: passing wrong argument')
params_str = parse_params_str(params_str.replace('}', ''))
# print(label_str, params_str)
factor_family = [family for family in pool.families if label_str in family.tokens][0]
_, factor = factor_family.create(label=label_str, all_vars = all_vars, **params_str)
factor.set_param(param = params_str['power'], name = 'power')
return factor
def parse_params_str(param_str):
assert isinstance(param_str, str), 'Passed parameters are not in string format'
params_split = param_str.split(',')
params_parsed = dict()
for param in params_split:
temp = param.split(':')
temp[0] = temp[0].replace(' ', '')
params_parsed[temp[0]] = float(temp[1]) if '.' in temp[1] else int(temp[1])
return params_parsed
class CoeffLessEquation():
def __init__(self, lp_terms : Union[list, tuple, dict], rp_term : Union[list, tuple, dict],
pool, all_vars, use_pic: bool = False):
'''
``lp_terms''
'''
if isinstance(lp_terms, dict):
if not len(lp_terms.keys()) == len(rp_term.keys()):
raise KeyError(f'Number of left parts {lp_terms.keys()} mismatches right parts {rp_term.keys()}.')
equations = []
for variable in rp_term.keys():
lp_terms_translated = [Term(pool, passed_term = [parse_factor(factor, pool, all_vars) for factor in term],
collapse_powers=False) for term in lp_terms[variable]]
rp_translated = Term(pool, passed_term = [parse_factor(factor, pool, all_vars) for factor in rp_term[variable]],
collapse_powers=False)
lp_values = np.vstack(list(map(lambda x: x.evaluate(False).reshape(-1), lp_terms_translated)))
rp_value = rp_translated.evaluate(False).reshape(-1)
lr = LinearRegression()
lr.fit(lp_values.T, rp_value)
# print(lr.coef_, lr.intercept_, type(lr.coef_))
terms_aggregated = lp_terms_translated + [rp_translated,]
max_factors = max([len(term.structure) for term in terms_aggregated])
metaparameters={'terms_number': {'optimizable': False, 'value': len(term_list)},
'max_factors_in_term': {'optimizable': False, 'value': max_factors}}
for var_key in all_vars:
metaparameters[('sparsity', var_key)] = {'optimizable': True, 'value': 0.}
equation = Equation(pool=pool, basic_structure=terms_aggregated,
metaparameters=metaparameters)
# terms_number=len(lp_terms) + 1, max_factors_in_term=max_factors)
equation.target_idx = len(terms_aggregated) - 1
equation.weights_internal = np.append(lr.coef_, lr.intercept_)
equation.weights_final = np.append(lr.coef_, lr.intercept_)
equations.append(equation)
self.system = SoEq(pool = pool, metaparameters=metaparameters)
self.system.use_default_multiobjective_function(use_pic = use_pic)
self.system.create(equations)
else:
self.lp_terms_translated = [Term(pool, passed_term = [parse_factor(factor, pool, all_vars) for factor in term],
collapse_powers=False) for term in lp_terms]
self.rp_translated = Term(pool, passed_term = [parse_factor(factor, pool, all_vars) for factor in rp_term],
collapse_powers=False)
self.lp_values = np.vstack(list(map(lambda x: x.evaluate(False).reshape(-1), self.lp_terms_translated)))
self.rp_value = self.rp_translated.evaluate(False).reshape(-1)
lr = LinearRegression()
lr.fit(self.lp_values.T, self.rp_value)
# print(lr.coef_, lr.intercept_, type(lr.coef_))
terms_aggregated = self.lp_terms_translated + [self.rp_translated,]
max_factors = max([len(term.structure) for term in terms_aggregated])
metaparameters={'terms_number': {'optimizable': False, 'value': len(term_list)},
'max_factors_in_term': {'optimizable': False, 'value': max_factors}}
for var_key in all_vars:
metaparameters[('sparsity', var_key)] = {'optimizable': True, 'value': 0.}
self.equation = Equation(pool=pool, basic_structure=terms_aggregated,
metaparameters=metaparameters)
# terms_number=len(lp_terms) + 1, max_factors_in_term=max_factors)
self.equation.target_idx = len(terms_aggregated) - 1
self.equation.weights_internal = np.append(lr.coef_, lr.intercept_)
self.equation.weights_final = np.append(lr.coef_, lr.intercept_)
self.system = SoEq(pool = pool, metaparameters=metaparameters)
self.system.use_default_multiobjective_function(use_pic = use_pic)
self.system.create(equations)