IndexError: list index out of range

[LilianYou]

Dear experts,

I'm encountering an error when using Nibetaseries. Is the error indicating that my event file does not match my nifti data?

Also, I have a side question. The tutorial used Shaefer 2018 atlas but the atlas is only for the cerebral cortex. If I want to look at subcortical regions such as thalamus, is there any recommended atlas that can go well with nibetaseries?

Thanks,
Lily

[jdkent]

Hi @LilianYou,

This error is indicating that the code cannot find the bold file, could you provide the names of the files for the bids directory you are using?

In a bash terminal, something like this could work.
tree /path/to/bids/directory

For your side question, nibetaseries has not been "validated" on any atlases per say, so my loose recommendation would be to use any functionally derived atlas, and which one could depend on your research question and granularity you wish.

Hope that helps!
James