First Meeting 12 19 2016

Goals:

Remove redundant code by using functions JK: Simplify variable usage (keep variables that contain other variables in their name to a minimum) ^^^mostly talking about directory paths. Either we should assign each directory path a variable in the beginning of the script or just write out the directory path. ^^^Additionally, I would like to make a dictionary for variables, so we can standardize variable usage across scripts. JK: make clobber more sensitive to where you are in the analysis (e.g. use my function clobber and switch on/off whether you want to clobber a certain section of your analysis) Also if your script exits due to unexpected shutdown, it will be able to pick up where you left off with little redundancy. Unify scripts into one streamlined script with functions, flags, and forks Get rid of rsParams Get rid of ROIs directory, supply path to ROIs Nuisance regression branches: -classic (no AROMA, global signal + WM ROI + latvent ROI regression, motion scrub) -classic+AROMA -AROMA+compcor -AROMA+compcor+GMR