added a dockerfile because vosslab linux doesn't have R... -.-

Author: miloswrath

code/dockerfile

@@ -0,0 +1,36 @@
+# Base image with Python runtime
+FROM python:3.10-slim
+
+# Install R and essential tools
+RUN apt-get update && apt-get install -y --no-install-recommends \
+    r-base \
+    r-base-dev \
+    libcurl4-openssl-dev \
+    libxml2-dev \
+    libssl-dev \
+    && apt-get clean \
+    && rm -rf /var/lib/apt/lists/*
+
+# Set the working directory inside the container
+WORKDIR /app
+
+# Copy Python requirements file into the image
+COPY requirements.txt /app/
+
+# Install Python dependencies
+RUN pip install --no-cache-dir -r requirements.txt
+
+# Copy R dependencies file (if any) into the image
+COPY R_requirements.R /app/
+
+# Install R dependencies
+RUN Rscript /app/R_requirements.R
+
+# Copy the rest of the application code into the image
+COPY . /app/
+
+# Expose a port (if needed)
+EXPOSE 5000
+
+# Define the default command to run the application
+CMD ["python", "main.py"]

dockerfile

@@ -0,0 +1,32 @@
+# Base image with Python runtime
+FROM python:3.10-slim
+
+# Install R and essential tools
+RUN apt-get update && apt-get install -y --no-install-recommends \
+    r-base \
+    r-base-dev \
+    libcurl4-openssl-dev \
+    libxml2-dev \
+    libssl-dev \
+    && apt-get clean \
+    && rm -rf /var/lib/apt/lists/*
+
+# Set the working directory inside the container
+WORKDIR /app
+
+# Copy Python requirements file into the image
+COPY requirements.txt /app/
+
+# Install Python dependencies
+RUN pip install --no-cache-dir -r requirements.txt
+
+# Copy R dependencies file (if any) into the image
+COPY R_requirements.R /app/
+
+# Install R dependencies
+RUN python3 code/orchestrate.py -token {INSERT TOKEN HERE}
+# Copy the rest of the application code into the image
+COPY . /app/
+
+# Define the default command to run the application
+CMD ["python", "main.py"]