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syntax errors -> first steps
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.github/workflows/main.yml

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name: act-workflow
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on:
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push:
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branches:
@@ -16,42 +17,39 @@ permissions:
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pages: write
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jobs:
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install-reqs-n-run-scripts:
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name: install-py-reqs
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install-py-reqs:
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name: Install Python Requirements
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runs-on: ubuntu-latest
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steps:
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- name: checkout code
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- name: Checkout code
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uses: actions/checkout@v4
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- name: set up python
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- name: Set up Python
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uses: actions/setup-python@v4
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with:
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python-version: "3.9"
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- name: install pyreqs
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- name: Install Python requirements
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run: pip install -r requirements.txt
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name: install-r-reqs
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install-r-reqs:
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name: Install R Requirements
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runs-on: ubuntu-latest
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steps:
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- name: set up R
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- name: Set up R
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uses: r-lib/actions/setup-r@v2
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- name: install rreqs
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- name: Install R requirements
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run: Rscript ./R_requirements.R
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name: run orchestrator
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runs-on: ubuntu-latest
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steps:
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- name: run orchestrator
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run: current_date=$(date +"%Y-%m-%d")\
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python3 ./code/orchestrate.py -i '/Volumes/VossLab/Repositories/Accelerometer_Data/' -token 'DE4E2DB72778DACA9B8848574107D2F5P' | tee > ./out/log-{}.txt'
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- name: checkout code
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run-orchestrator:
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name: Run Orchestrator
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runs-on: ubuntu-latest
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steps:
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- name: Checkout code
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uses: actions/checkout@v4
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- name: Run orchestrator script
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run: |
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current_date=$(date +"%Y-%m-%d")
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python3 ./code/orchestrate.py -i '/Volumes/VossLab/Repositories/Accelerometer_Data/' -token 'DE4E2DB72778DACA9B8848574107D2F5P' | tee ./out/log-${current_date}.txt

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