automated commit by vosslab linux #69

	name: run act workflow

	on:
	push:
	branches: [ "main", "dev" ]

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout repository
	uses: actions/checkout@v4

	- name: Setup R
	uses: r-lib/actions/setup-r@v2
	with:
	r-version: '4.2.0' # Specify the R version

	- name: Install R packages
	run: \|
	Rscript -e 'install.packages(c("ggplot2","plyr","optparse","tidyr","remotes"), repos="https://cloud.r-project.org", dependencies=TRUE)'
	Rscript -e 'remotes::install_version("GGIR", version = "3.2.6", repos = "https://cloud.r-project.org")'

	- name: Set up Python 3.10
	uses: actions/setup-python@v3
	with:
	python-version: "3.10"

	- name: Install Python dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install flake8 pytest
	if [ -f code/requirements.txt ]; then pip install -r code/requirements.txt; fi

	- name: Run Python script
	env:
	RC_TOKEN: ${{ secrets.RC_TOKEN }}
	run: \|
	python code/main.py 1 "$RC_TOKEN"

	- name: Commit and push changes to main
	run: \|
	git config --global user.name "GitHub Actions Bot"
	git config --global user.email "github-actions[bot]@users.noreply.github.com"
	git checkout main
	git add .
	git commit -m "Automated changes from GitHub Actions"
	git push origin main

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