automated commit by vosslab linux

Author: miloswrath

code/core/acc_new.R

@@ -24,6 +24,13 @@ main <- function() {
   ProjectDir <- opt$project_dir
   ProjectDerivDir <- opt$deriv_dir
 
+  # Ensure leading slash for deriv_dir
+  if (!grepl("^/", ProjectDerivDir)) {
+    ProjectDerivDir <- paste0("/", ProjectDerivDir)
+  }
+  if (!grepl("/$", ProjectDerivDir)) {
+    ProjectDerivDir <- paste0(ProjectDerivDir, "/")
+  }
   # Print values to verify
   print(paste("Project Directory:", ProjectDir))
   print(paste("Derivatives Directory:", ProjectDerivDir))

code/core/gg.py

@@ -17,7 +17,7 @@ def __init__(self, matched, intdir, obsdir):
         self.matched = matched
         self.INTDIR = intdir.rstrip('/') + '/'
         self.OBSDIR = obsdir.rstrip('/') + '/'
-        self.DERIVATIVES = "/derivatives/GGIR-3.2.6-test"  # Defined within the class
+        self.DERIVATIVES = "derivatives/GGIR-3.2.6-test"  # Defined within the class
 
     def run_gg(self):
         """

code/logs/log.txt

@@ -81001,3 +81001,5 @@ Directory specified by argument outputdir does not exist
 GGIR completed successfully for /mnt/nfs/lss/vosslabhpc/Projects/BOOST/ObservationalStudy/3-experiment/data/act-obs-test/.
 Starting QC pipeline for obs project.
 Unexpected error when processing /mnt/nfs/lss/vosslabhpc/Projects/BOOST/ObservationalStudy/3-experiment/data/act-obs-test/: cannot access local variable 'sub' where it is not associated with a value
+[main 9bbb463] automated commit by vosslab linux
+ 7 files changed, 6206 insertions(+), 6 deletions(-)