engaging.config

params {
    config_profile_description = 'MIT Engaging HPC cluster profile.'
    config_profile_contact     = 'Phil Palmer (@PhilPalmer)'
}

process {
    // Launch intensive assembly processes on newnodes partition with max resources
    withName: SPADES {
        clusterOptions = '-p newnodes'
        cpus           = 20
        memory         = 250.GB
        time           = 12.h
        errorStrategy  = { task.exitStatus in [143, 137, 1] ? 'retry' : 'finish' }
        maxRetries     = 3
    }
    withName: MEGAHIT {
        clusterOptions = '-p newnodes'
        cpus           = 20
        memory         = 250.GB
        time           = 12.h
        errorStrategy  = { task.exitStatus in [143, 137, 104, 134, 139, 250] ? 'retry' : 'finish' }
        maxRetries     = 3
    }
}