add dependency checker for R and python scripts

[vm-wylbur]

once a script has setup an argparse parser, and run it, it should check that the Makefile had all the arguments listed as dependencies and warn the user if something is missing.

[vm-wylbur]

getdeps --t output/path_to_target.csv 

to parse the Makefile and write a whitespace-delimited list of dependencies that are not in this task.