preparing for CRAN resubmission

Author: thegargiulian

NEWS.md

@@ -4,6 +4,8 @@
 
 * Setting tests involving `lookup_estimates()` to `skip_on_cran` with `testthat` due to flaky behavior with Linux development environments on CRAN. These tests are working on all other testing environments.
 
+* Setting tests involving `estimate_mse()` to `skip_on_cran` because they are resulting in long build times for Windows and Debian.
+
 # verdata 1.0.1
 
 * Timing test for `mse()` using `lookup_estimates` option uses more generous comparison to ensure that test doesn't fail unnecessarily when estimates are correctly looked up.

README.md

@@ -25,19 +25,19 @@ Descargar datos del Departamento Administrativo Nacional de Estadística (DANE):
 
 Descargar datos del Human Rights Data Analysis Group (HRDAG) con IPFS:
 
-- Desaparición [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/desaparicion-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/ipfs/bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy/desaparicion-v1.parquet.zip)
-- Reclutamiento [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/reclutamiento-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/ipfs/bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy/reclutamiento-v1.parquet.zip)
-- Homicidio [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/homicidio-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/ipfs/bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy/homicidio-v1.parquet.zip)
-- Secuestro [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/secuestro-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/ipfs/bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy/secuestro-v1.parquet.zip)
+- Desaparición [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/desaparicion-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/desaparicion-v1.parquet.zip)
+- Reclutamiento [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/reclutamiento-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/reclutamiento-v1.parquet.zip)
+- Homicidio [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/homicidio-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/homicidio-v1.parquet.zip)
+- Secuestro [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/secuestro-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/secuestro-v1.parquet.zip)
 
 ### Descargar datos para diseñar nuevos análisis del conflicto colombiano (v2)
 
 Descargar datos del Human Rights Data Analysis Group (HRDAG) con IPFS:
 
-- Desaparición [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/desaparicion-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/desaparicion-v2.parquet.zip)
-- Reclutamiento [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/reclutamiento-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/reclutamiento-v2.parquet.zip)
-- Homicidio [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/homicidio-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/homicidio-v2.parquet.zip)
-- Secuestro [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/secuestro-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/secuestro-v2.parquet.zip)
+- Desaparición [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/desaparicion-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/desaparicion-v2.parquet.zip)
+- Reclutamiento [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/reclutamiento-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/reclutamiento-v2.parquet.zip)
+- Homicidio [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/homicidio-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/homicidio-v2.parquet.zip)
+- Secuestro [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/secuestro-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/secuestro-v2.parquet.zip)
 
 Ambas versiones de los datos corresponden a 100 réplicas para cada violación, los cuales fueron producto del proceso de imputación estadística múltiple de campos faltantes (ver sección 4 del [informe metodológico del proyecto](https://hrdag.org/CEV-JEP/20250306-methodological-report-ES.pdf)). Además, el repositorio [`verdata-examples`](https://github.com/HRDAG/verdata-examples) contiene ejemplos que ilustran cómo usar correctamente estos datos (réplicas) a través del paquete previamente mencionado.
 

cran-comments.md

@@ -14,86 +14,18 @@
 # devtools::check_win_devel() results
 
 * using log directory 'd:/RCompile/CRANguest/R-devel/verdata.Rcheck'
-* using R Under development (unstable) (2026-02-01 r89366 ucrt)
+* using R Under development (unstable) (2026-02-02 r89367 ucrt)
 * using platform: x86_64-w64-mingw32
 * R was compiled by
     gcc.exe (GCC) 14.3.0
     GNU Fortran (GCC) 14.3.0
 * running under: Windows Server 2022 x64 (build 20348)
 * using session charset: UTF-8
+* current time: 2026-02-03 16:49:08Z
 * checking for file 'verdata/DESCRIPTION' ... OK
 * this is package 'verdata' version '1.0.2'
 * package encoding: UTF-8
-* checking CRAN incoming feasibility ... [12s] NOTE
-Maintainer: 'Maria Gargiulo <mariag@hrdag.org>'
-
-Found the following (possibly) invalid URLs:
-  URL: https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/desaparicion-v1.csv.zip (moved to https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/desaparicion-v1.csv.zip)
-    From: README.md
-    Status: 301
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-  URL: https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/desaparicion-v2.csv.zip (moved to https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/desaparicion-v2.csv.zip)
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-  URL: https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/reclutamiento-v2.csv.zip (moved to https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/reclutamiento-v2.csv.zip)
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-    From: README.md
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-    From: README.md
-    Status: 301
-    Message: Moved Permanently
-  URL: https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/ipfs/bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy/secuestro-v1.parquet.zip (moved to https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/secuestro-v1.parquet.zip)
-    From: README.md
-    Status: 301
-    Message: Moved Permanently
-For content that is 'Moved Permanently', please change http to https,
-add trailing slashes, or replace the old by the new URL.
+* checking CRAN incoming feasibility ... [12s] OK
 * checking package namespace information ... OK
 * checking package dependencies ... OK
 * checking if this is a source package ... OK
@@ -139,14 +71,12 @@ add trailing slashes, or replace the old by the new URL.
 * checking R/sysdata.rda ... OK
 * checking examples ... OK
 * checking for unstated dependencies in 'tests' ... OK
-* checking tests ... [27m] OK
+* checking tests ... [13s] OK
   Running 'spelling.R'
-  Running 'testthat.R' [27m]
+  Running 'testthat.R' [13s]
 * checking PDF version of manual ... [12s] OK
 * checking HTML version of manual ... OK
 * DONE
-Status: 1 NOTE
-
-The links flagged by the check are correct and do not need to be changed.
+Status: OK
 
 <!-- done. -->

inst/docs/README-en.md

@@ -25,19 +25,19 @@ Download data from the Departamento Administrativo Nacional de Estadística (DAN
 
 Download data from the Human Rights Data Analysis Group (HRDAG) via IPFS:
 
-- Disappearance [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/desaparicion-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/ipfs/bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy/desaparicion-v1.parquet.zip)
-- Forced recruitment [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/reclutamiento-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/ipfs/bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy/reclutamiento-v1.parquet.zip)
-- Homicide [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/homicidio-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/ipfs/bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy/homicidio-v1.parquet.zip)
-- Kidnapping [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/secuestro-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/ipfs/bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy/secuestro-v1.parquet.zip)
+- Disappearance [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/desaparicion-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/desaparicion-v1.parquet.zip)
+- Forced recruitment [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/reclutamiento-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/reclutamiento-v1.parquet.zip)
+- Homicide [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/homicidio-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/homicidio-v1.parquet.zip)
+- Kidnapping [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/secuestro-v1.csv.zip) [[parquet]](https://bafybeicfjzjsl72ntzvne5apc4mubhtvsb7pd2qgvtqhuzbjznm7bxkuzy.ipfs.w3s.link/secuestro-v1.parquet.zip)
 
 ### Download data to design your own analyses of the armed conflict in Colombia (v2)
 
 Download data from the Human Rights Data Analysis Group (HRDAG) via IPFS:
 
-- Disappearance [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/desaparicion-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/desaparicion-v2.parquet.zip)
-- Forced recruitment [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/reclutamiento-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/reclutamiento-v2.parquet.zip)
-- Homicide [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/homicidio-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/homicidio-v2.parquet.zip)
-- Kidnapping [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/secuestro-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/ipfs/bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm/secuestro-v2.parquet.zip)
+- Disappearance [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/desaparicion-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/desaparicion-v2.parquet.zip)
+- Forced recruitment [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/reclutamiento-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/reclutamiento-v2.parquet.zip)
+- Homicide [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/homicidio-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/homicidio-v2.parquet.zip)
+- Kidnapping [[csv]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/secuestro-v2.csv.zip) [[parquet]](https://bafybeicb22gzaugj6jlrg47542oh7i2alzqbxwijedx7jfrstwgaxkxonm.ipfs.w3s.link/secuestro-v2.parquet.zip)
 
 Both versions of the data are 100 replicate data files for each violation. These replicates were created using multiple imputation to address missing fields (see Section 4 of the [Methodological Report](https://hrdag.org/CEV-JEP/20250306-methodological-report-EN.pdf)). The repository [`verdata-examples`](https://github.com/HRDAG/verdata-examples) contains examples that illustrate how to correctly use the data and this package. These examples are currently only available in Spanish, but we are working on translating them to English.