adding new test coverage workflow; maybe this won't automatically fail?

Author: thegargiulian

.github/workflows/test-coverage.yaml

@@ -4,9 +4,10 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
 
-name: test-coverage
+name: test-coverage.yaml
+
+permissions: read-all
 
 jobs:
   test-coverage:
@@ -15,36 +16,47 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::covr
+          extra-packages: any::covr, any::xml2
           needs: coverage
 
       - name: Test coverage
         run: |
-          covr::codecov(
+          cov <- covr::package_coverage(
             quiet = FALSE,
             clean = FALSE,
-            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          print(cov)
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
+      - uses: codecov/codecov-action@v5
+        with:
+          # Fail if error if not on PR, or if on PR and token is given
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
+          files: ./cobertura.xml
+          plugins: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
       - name: Show testthat output
         if: always()
         run: |
           ## --------------------------------------------------------------------
-          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
         shell: bash
 
       - name: Upload test results
         if: failure()
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: coverage-test-failures
           path: ${{ runner.temp }}/package

README.md

@@ -1,8 +1,8 @@
 Click [here](https://github.com/HRDAG/verdata/blob/main/inst/docs/README-en.md) for instructions in English.
 
 <!-- badges: start -->
-[![R-CMD-check](https://github.com/HRDAG/verdata/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/HRDAG/verdata/actions/workflows/check-standard.yaml)
-  [![Codecov test coverage](https://codecov.io/gh/HRDAG/verdata/branch/main/graph/badge.svg)](https://app.codecov.io/gh/HRDAG/verdata?branch=main)
+[![DOI](https://joss.theoj.org/papers/10.21105/joss.05844/status.svg)](https://doi.org/10.21105/joss.05844)
+[![Codecov test coverage](https://codecov.io/gh/HRDAG/verdata/graph/badge.svg)](https://app.codecov.io/gh/HRDAG/verdata)
 <!-- badges: end -->
 
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