missing modules? #6
Workflow file for this run
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| name: Check Carrot Mapper Code Quality | |
| ### | |
| # copied from https://github.com/Health-Informatics-UoN/carrot-transform/blob/main/.github/workflows/check.quality.yml | |
| permissions: | |
| contents: read | |
| pull-requests: write | |
| on: | |
| push: | |
| jobs: | |
| ruff: | |
| name: Run Ruff | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| steps: | |
| - name: Check out the repo | |
| uses: actions/checkout@v4 | |
| - name: Run Ruff Checks | |
| uses: astral-sh/ruff-action@39f75e526a505e26a302f8796977b50c13720edf # v3.2.1 | |
| with: | |
| args: "check --select I ." | |
| - name: Run Ruff Format | |
| uses: astral-sh/ruff-action@39f75e526a505e26a302f8796977b50c13720edf # v3.2.1 | |
| with: | |
| args: "format --check --diff" | |
| coverage: | |
| name: carrot-mapper coverage | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v5 | |
| - name: Run tests | |
| # run the coverage check, but, don't worry about coverage of the tests themselves | |
| # ... or the docker tests ... | |
| run: | | |
| uv run coverage run --omit=tests/* -m pytest --junitxml=pytest.xml | |
| uv run coverage xml | |
| # adds a comment to the PR detailing code coverage | |
| - name: Pytest coverage comment | |
| if: github.event_name == 'pull_request' | |
| uses: MishaKav/pytest-coverage-comment@main | |
| with: | |
| pytest-xml-coverage-path: coverage.xml | |
| junitxml-path: pytest.xml | |
| continue-on-error: true |