ruff attempt

Author: g-pechorin

.github/workflows/check.quality.yml

@@ -0,0 +1,59 @@
+name: Check Carrot Mapper Code Quality
+
+###
+# copied from https://github.com/Health-Informatics-UoN/carrot-transform/blob/main/.github/workflows/check.quality.yml
+
+permissions:
+  contents: read
+  pull-requests: write
+
+on:
+  push:
+
+jobs:
+
+  ruff:
+    name: Run Ruff
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+
+    steps:
+      - name: Check out the repo
+        uses: actions/checkout@v4
+
+      - name: Run Ruff Checks
+        uses: astral-sh/ruff-action@39f75e526a505e26a302f8796977b50c13720edf # v3.2.1
+        with:
+          args: "check --select F401 --select I ."
+      
+      - name: Run Ruff Format
+        uses: astral-sh/ruff-action@39f75e526a505e26a302f8796977b50c13720edf # v3.2.1
+        with:
+          args: "format --check --diff"
+
+  coverage:
+    name: carrot-mapper coverage
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v5
+
+      - name: Run tests
+        # run the coverage check, but, don't worry about coverage of the tests themselves
+        # ... or the docker tests ...
+        run: |
+          uv run coverage run --omit=tests/* -m pytest --junitxml=pytest.xml
+          uv run coverage xml
+
+      # adds a comment to the PR detailing code coverage
+      - name: Pytest coverage comment
+        if: github.event_name == 'pull_request'
+        uses: MishaKav/pytest-coverage-comment@main
+        with:
+          pytest-xml-coverage-path: coverage.xml
+          junitxml-path: pytest.xml
+        continue-on-error: true

pyproject.toml

@@ -18,10 +18,11 @@ test = [
 ]
 dev = [
     "pre-commit>=3.6.1,<4",
-    "isort>=5.13.2,<6",
-    "black>=24.2.0,<25",
     "mypy>=1.8.0,<2",
     "flake8>=7.0.0,<8",
+    "pytest>=7.4.4",
+    "coverage>=7.4.1",
+    "ruff>=0.13.0",
 ]
 
 [tool.uv]