Merge pull request #226 from HelgeGehring/pin-python-312

pin python to 3.12 due to slepc4py not yet available for 3.13

Author: HelgeGehring

.docker/Dockerfile

@@ -3,12 +3,19 @@ FROM ghcr.io/mamba-org/micromamba:latest
 USER root
 RUN apt-get update && apt-get install -y --no-install-recommends \
     gmsh \
+    curl \
+    patchelf \
     && rm -rf /var/lib/apt/lists/*
+
+RUN curl -fL https://julialang-s3.julialang.org/bin/linux/x64/1.11/julia-1.11.3-linux-x86_64.tar.gz \
+    | tar -C /usr/local -xz --strip-components=1
+RUN patchelf --clear-execstack /usr/local/lib/julia/libopenlibm.so
+
 USER $MAMBA_USER
 
 COPY  --chmod=777 . ${HOME}
 
-RUN micromamba install -y -n base -f environment.yml julia && micromamba clean --all --yes
+RUN micromamba install -y -n base -f environment.yml && micromamba clean --all --yes
 ARG MAMBA_DOCKERFILE_ACTIVATE=1
 RUN pip install --no-cache notebook jupyterlab
 RUN pip install .

.github/workflows/build.yml

@@ -55,7 +55,7 @@ jobs:
             miniforge-version: latest
             activate-environment: env
             use-mamba: true
-            python-version: "3.11"
+            python-version: "3.12"
       - name: Add conda to system path
         run: |
           echo $CONDA/bin >> $GITHUB_PATH
@@ -66,7 +66,7 @@ jobs:
           UV_SYSTEM_PYTHON: 1
         run: |
           sudo apt-get install -y libglu1-mesa
-          mamba install slepc4py=*=complex* uv -y
+          mamba env create -f environment.yml
           uv pip install -r pyproject.toml
       - name: Build package
         env:

.github/workflows/docs.yml

@@ -36,7 +36,7 @@ jobs:
           UV_SYSTEM_PYTHON: 1
         run: |
           sudo apt-get install -y libglu1-mesa xvfb
-          mamba install slepc4py=*=complex* -y
+          mamba env create -f environment.yml
           mamba install julia
           uv pip install .
           uv pip install "jupyter-book<2"

environment.yml

@@ -2,7 +2,7 @@ name: conda_env
 channels:
   - conda-forge
 dependencies:
-  - python
+  - python=3.12
   - pip
   - slepc4py=*=complex*
   - numpy