CLEANUP: Deprecated anyMissing(), colAnyMissings(), and rowAnyMissings()

[HenrikBengtsson]

anyMissing(), colAnyMissings(), and rowAnyMissings() are superseeded by base::anyNA(), colAnyNAs(), and rowAnyNAs() since way back.

[HenrikBengtsson]

anyNA() was added in R 3.1.0. This package supports R (>= 2.12.0), so if we want to keep that support, we need a plan for that too.

[PeteHaitch]

FWIW I've deprecated (BioC 3.18) and made defunct (BioC 3.19) the implementations of colAnyMissings() and rowAnyMissings() in DelayedMatrixStats.
It never had a anyMissing() implementation.

We opted to not implement colAnyMissings(), rowAnyMissings(), and anyMisisng() generics when we made MatrixGenerics, following the note in matrixStats that these were no longer recommended and may be removed in future versions.

[HenrikBengtsson]

Action plan:

• Provide anyNA() for R (< 3.1.0)
• Deprecate the "missing" variants

[HenrikBengtsson]

Actually, anyMissing() takes argument idxs too, so, I guess we should keep it for now and only deprecated the row- and col- versions.