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\documentclass[letterpaper]{article}
\input{bufftex}
\usepackage{cite}
\graphicspath{{figures/}}
\newcommand{\TInv}{\rotatebox[origin=c]{180}{$T$}}
\newcommand{\vbTInv}{\rotatebox[origin=c]{180}{$\vb T$}}
\newcommand{\vbTInvSmall}{\rotatebox[origin=c]{180}{\scriptsize{$\vb T$}}}
\newcommand{\bbTInv}{\rotatebox[origin=c]{180}{$\mathbb{T}$}}
\newcommand{\bbVInv}{\rotatebox[origin=c]{180}{$\mathbb{V}$}}
\newcommand{\vbSigma}{\boldsymbol{\Sigma}}
\newcommand{\fd}{^{\text{\tiny{F}}\dagger}}
% 'IEM' stands for 'imaginary part of epsilon matrix'
\newcommand{\vbIEM}{\boldsymbol{\Sigma}}
\newcommand{\IEM}{\Sigma}
\newcommand{\citeasnoun}[1]{Ref.~\citen{#1}}
\newcommand{\citeasnouns}[1]{Refs.~\citen{#1}}
%------------------------------------------------------------
%------------------------------------------------------------
%- Special commands for this document -----------------------
%------------------------------------------------------------
%------------------------------------------------------------
\newcommand{\vbxi}{\boldsymbol{\xi}}
\newcommand{\im}{\text{Im }}
\newcommand{\vbeps}{\boldsymbol{\epsilon}}
%------------------------------------------------------------
%------------------------------------------------------------
%- Start of actual document
%------------------------------------------------------------
%------------------------------------------------------------
\begin{document}
In the FVC approach, the thermal average of
a power, force, or torque quantity $Q$ is
computed by integrating a spectral density over all
frequencies:
%====================================================================%
\begin{align*}
Q &= \int_0^\infty \big\langle Q\big\rangle_\omega \, d\omega
\\
\big\langle Q \big \rangle_\omega
&=\text{Tr }\Big[\vb Q\sups{PFT} \vb W \vb R \vb W^\dagger\Big]
\end{align*}
%====================================================================%
where
\begin{itemize}
\item the $\vb Q\supt{PFT}$ matrix is the matrix one sandwiches
between the vectors of volume-current coefficients to
obtain the power, force, or torque
\item $\vb R$ is a matrix describing the Rytov source density, and
\item $\vb W$ is a matrix describing the ``dressing'' of the
Rytov density by the polarization response of the material
geometry.
\end{itemize}
The elements of the $\vb R$ matrix are
%====================================================================%
$$ R_{\alpha\beta}=\frac{2k}{\pi Z_0}
\EXPTWO{\vb b_\alpha}{ \Delta\Theta(\vb x) (\vbeps(\vb x) - \vb 1)}{\vb b_\beta}
$$
%====================================================================%
where $\Delta\Theta(\vb x)$ is the difference between the Bose-Einstein
factor at the local temperature at $\vb x$ and the Bose-Einstein
factor at the temperature of the environment:
%====================================================================%
$$\Delta\Theta(\vb x) = \Theta\Big( T(\vb x), \omega \Big)
-\Theta\Big( T\sups{env}, \omega \Big).
$$
%====================================================================%
It is now convenient to split the $\vb R$ matrix into separate
contributions from the various objects in the geometry:
%====================================================================%
$$ \vb R = \vb R_1 + \vb R_2 + \cdots + \vb R_{N} $$
%====================================================================%
and to extract from the $n$th term a scalar
prefactor $\wh{\Delta\Theta}_n$ that involves the
volume average of the temperature in body $n$:
%====================================================================%
\begin{align*}
\wh{\Delta\Theta}_n
&\equiv \Theta\Big( \wh{T}_n, \omega \Big) -
\Theta\Big( T\sups{env}, \omega \Big)
\\
\wh{T}_n
&\equiv
\frac{1}{\mc V_n} \int_{\mc V_n} T(\vb x) \, d\vb x.
\end{align*}
%====================================================================%
The $\vb R$ matrix then reads
%====================================================================%
$$ \vb R =
\wh{\Delta\Theta}_1 \, \wh{\vb R}_1
+\wh{\Delta\Theta}_2 \, \wh{\vb R}_2
+\cdots
+\wh{\Delta\Theta}_N \, \wh{\vb R}_N
$$
%====================================================================%
where the elements of the $\wh{R}_n$ matrices are just the
$\vb R$-matrix elements normalized by $\wh{\Delta\Theta}_n$:
%====================================================================%
\numeq{NormalizedRMatrix}
{
\wh R_{n;\alpha\beta}=
\frac{2k}{\pi Z_0 \wh{\Delta\Theta}}
\EXPTWO{\vb b_\alpha}
{ \Delta\Theta(\vb x) (\vbeps(\vb x) - \vb 1)}{\vb b_\beta}.
}
%====================================================================%
This allows us to resolve the quantity $Q$ into contributions
from thermal sources in each object:
%====================================================================%
\begin{align*}
Q&=\sum Q_n
\\
\int_0^\infty \sum_n \Delta\Theta(T_n,\omega)\Phi_n(\omega) \,d\omega
\label{Qn}
\Phi_n(\omega)
&=\text{Tr }\Big[\vb Q\sups{PFT} \vb W \wh{\vb R}_n \vb W^\dagger\Big].
\end{align*}
%====================================================================%
For bodies of uniform temperature, the $\Phi_n$ factor here is just
the same flux quantity computed by {\sc scuff-neq}.
This normalization scheme does not work for objects whose average
temperature is equal to that of the environment, $\wh T_n=T\sups{env}$.
In this case we remove the factor $\wh{\Delta\Theta}$ from both
the denominator of (\ref{NormalizedRMatrix})
and the numerator of (\ref{Qn}).
\end{document}