From 9e84fe21ddd0aa98208c60a5eb9f981114841ddc Mon Sep 17 00:00:00 2001 From: Arsenios Chatzigeorgiou <49944135+arschat@users.noreply.github.com> Date: Wed, 8 Jan 2025 14:55:02 +0200 Subject: [PATCH 1/5] Replace enum value in hca_bionetwork name --- docs/jsonBrowser/module.md | 2 +- json_schema/module/project/hca_bionetwork.json | 2 +- json_schema/update_log.csv | 4 ++++ 3 files changed, 6 insertions(+), 2 deletions(-) diff --git a/docs/jsonBrowser/module.md b/docs/jsonBrowser/module.md index 6ab9bf881..430e1b72c 100644 --- a/docs/jsonBrowser/module.md +++ b/docs/jsonBrowser/module.md @@ -386,7 +386,7 @@ Location: module/project/hca_bionetwork.json Property name | Description | Type | Required? | Object reference? | User friendly name | Allowed values | Example --- | --- | --- | --- | --- | --- | --- | --- -name | HCA Bionetwork the project is a part of (e.g. Kidney). | string | no | | Official HCA Bionetwork | Adipose, Breast, Development, Eye, Genetic Diversity, Gut, Heart, Immune, Kidney, Liver, Lung, Musculoskeletal, Nervous System, Oral & Craniofacial, Organoid, Pancreas, Reproduction, Skin | Kidney; Lung +name | HCA Bionetwork the project is a part of (e.g. Kidney). | string | no | | Official HCA Bionetwork | Adipose, Breast, Development, Eye, Genetic Diversity, Gut, Heart, Immune, Kidney, Liver, Lung, Musculoskeletal, Nervous System, Oral and Craniofacial, Organoid, Pancreas, Reproduction, Skin | Kidney; Lung hca_tissue_atlas | A field describing if the project is part of a HCA Tissue Atlas (e.g. Brain Alzheimer Atlas). | string | no | | HCA Tissue Atlas | Adipose, Blood, Brain, Breast, Development, Eye, GDN, Gut, Heart, Immune, Kidney, Liver, Lung, MSK, ORCF, Organoid-Endoderm, Organoid-Neural, Pancreas, Retina, Reproduction, Skin | Retina hca_tissue_atlas_version | A field describing which version of the HCA Tissue Atlas is associated with the project (e.g. v1.0; v2.0) | string | no | | Official HCA Tissue Atlas Version | | v1.0; v2.0 atlas_project | A field describing if this project is the HCA Tissue Atlas project which integrates data from other datasets. | boolean | no | | Project Tissue Atlas Status | | Yes; No diff --git a/json_schema/module/project/hca_bionetwork.json b/json_schema/module/project/hca_bionetwork.json index bb3411505..112b05f89 100644 --- a/json_schema/module/project/hca_bionetwork.json +++ b/json_schema/module/project/hca_bionetwork.json @@ -34,7 +34,7 @@ "Lung", "Musculoskeletal", "Nervous System", - "Oral & Craniofacial", + "Oral and Craniofacial", "Organoid", "Pancreas", "Reproduction", diff --git a/json_schema/update_log.csv b/json_schema/update_log.csv index 3231ff199..4698b1f4d 100644 --- a/json_schema/update_log.csv +++ b/json_schema/update_log.csv @@ -1 +1,5 @@ Schema,Change type,Change message,Version,Date +module/project/hca_bionetwork,major,"Remove enum value in hca_bionetwork.name. Fix #1600",, +module/project/hca_bionetwork,patch,"Add enum value in hca_bionetwork.name. Fix #1600",, +type/project/project,major,"Remove enum value in hca_bionetwork.name. Fix #1600",, +type/project/project,patch,"Add enum value in hca_bionetwork.name. Fix #1600",, \ No newline at end of file From 0d8c0b0e79bf1936c4453ca9516338738a5faeff Mon Sep 17 00:00:00 2001 From: Arsenios Chatzigeorgiou <49944135+arschat@users.noreply.github.com> Date: Wed, 8 Jan 2025 14:57:24 +0200 Subject: [PATCH 2/5] Changed log message verbs --- json_schema/update_log.csv | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/json_schema/update_log.csv b/json_schema/update_log.csv index 4698b1f4d..59d20c9c5 100644 --- a/json_schema/update_log.csv +++ b/json_schema/update_log.csv @@ -1,5 +1,5 @@ Schema,Change type,Change message,Version,Date -module/project/hca_bionetwork,major,"Remove enum value in hca_bionetwork.name. Fix #1600",, -module/project/hca_bionetwork,patch,"Add enum value in hca_bionetwork.name. Fix #1600",, -type/project/project,major,"Remove enum value in hca_bionetwork.name. Fix #1600",, -type/project/project,patch,"Add enum value in hca_bionetwork.name. Fix #1600",, \ No newline at end of file +module/project/hca_bionetwork,major,"Removed enum value in hca_bionetwork.name. Fix #1600",, +module/project/hca_bionetwork,patch,"Added enum value in hca_bionetwork.name. Fix #1600",, +type/project/project,major,"Removed enum value in hca_bionetwork.name. Fix #1600",, +type/project/project,patch,"Added enum value in hca_bionetwork.name. Fix #1600",, \ No newline at end of file From 54d04ef362e555c108f169d5f6bf056df2efed9e Mon Sep 17 00:00:00 2001 From: Arsenios Chatzigeorgiou <49944135+arschat@users.noreply.github.com> Date: Mon, 20 Jan 2025 10:03:56 +0000 Subject: [PATCH 3/5] Remove redundant entries in update_log.csv --- json_schema/update_log.csv | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/json_schema/update_log.csv b/json_schema/update_log.csv index 59d20c9c5..820f75f0c 100644 --- a/json_schema/update_log.csv +++ b/json_schema/update_log.csv @@ -1,5 +1,2 @@ Schema,Change type,Change message,Version,Date -module/project/hca_bionetwork,major,"Removed enum value in hca_bionetwork.name. Fix #1600",, -module/project/hca_bionetwork,patch,"Added enum value in hca_bionetwork.name. Fix #1600",, -type/project/project,major,"Removed enum value in hca_bionetwork.name. Fix #1600",, -type/project/project,patch,"Added enum value in hca_bionetwork.name. Fix #1600",, \ No newline at end of file +module/project/hca_bionetwork,major,"Changed enum value in hca_bionetwork.name. Fix #1600",, \ No newline at end of file From 2897a61552ad36e0fa5ab7dd8f302156a741ddc9 Mon Sep 17 00:00:00 2001 From: Arsenios Chatzigeorgiou <49944135+arschat@users.noreply.github.com> Date: Mon, 20 Jan 2025 10:25:18 +0000 Subject: [PATCH 4/5] Ran release prepare script --- changelog.md | 8 ++++++++ json_schema/update_log.csv | 1 - json_schema/versions.json | 6 +++--- 3 files changed, 11 insertions(+), 4 deletions(-) diff --git a/changelog.md b/changelog.md index 8f9e4042e..b8e1f1369 100644 --- a/changelog.md +++ b/changelog.md @@ -7,6 +7,14 @@ and (starting with v4.0.0) this project adheres to [Semantic Versioning](http:// ## [Unreleased](https://github.com/HumanCellAtlas/metadata-schema/tree/staging) +### [module/project/hca_bionetwork.json - v2.0.0] - 2025-01-20 +### Changed +Changed enum value in hca_bionetwork.name. Fix #1600 + +### [type/project/project.json - v20.0.0] - 2025-01-20 +### Changed +Changed enum value in hca_bionetwork.name. Fix #1600 + ## [Released](https://github.com/HumanCellAtlas/metadata-schema/) ### [type/biomaterial/donor_organism.json - v17.1.0] - 2024-12-11 diff --git a/json_schema/update_log.csv b/json_schema/update_log.csv index 820f75f0c..3231ff199 100644 --- a/json_schema/update_log.csv +++ b/json_schema/update_log.csv @@ -1,2 +1 @@ Schema,Change type,Change message,Version,Date -module/project/hca_bionetwork,major,"Changed enum value in hca_bionetwork.name. Fix #1600",, \ No newline at end of file diff --git a/json_schema/versions.json b/json_schema/versions.json index 35789f50b..cddbef5e2 100644 --- a/json_schema/versions.json +++ b/json_schema/versions.json @@ -1,5 +1,5 @@ { - "last_update_date": "2024-12-11T09:29:09Z", + "last_update_date": "2025-01-20T10:24:12Z", "version_numbers": { "core": { "biomaterial": { @@ -76,7 +76,7 @@ "project": { "contact": "9.0.0", "funder": "2.0.0", - "hca_bionetwork": "1.0.2", + "hca_bionetwork": "2.0.0", "publication": "7.0.0" }, "protocol": { @@ -114,7 +114,7 @@ "process": "9.2.0" }, "project": { - "project": "19.0.1" + "project": "20.0.0" }, "protocol": { "analysis": { From 711b7f2680e25a7ffc674ca1282967d9910cc632 Mon Sep 17 00:00:00 2001 From: Arsenios Chatzigeorgiou <49944135+arschat@users.noreply.github.com> Date: Mon, 20 Jan 2025 14:11:27 +0000 Subject: [PATCH 5/5] Release from staging to master 2025-01-20. --- changelog.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/changelog.md b/changelog.md index b8e1f1369..c2a4d4557 100644 --- a/changelog.md +++ b/changelog.md @@ -7,6 +7,8 @@ and (starting with v4.0.0) this project adheres to [Semantic Versioning](http:// ## [Unreleased](https://github.com/HumanCellAtlas/metadata-schema/tree/staging) +## [Released](https://github.com/HumanCellAtlas/metadata-schema/) + ### [module/project/hca_bionetwork.json - v2.0.0] - 2025-01-20 ### Changed Changed enum value in hca_bionetwork.name. Fix #1600 @@ -15,8 +17,6 @@ Changed enum value in hca_bionetwork.name. Fix #1600 ### Changed Changed enum value in hca_bionetwork.name. Fix #1600 -## [Released](https://github.com/HumanCellAtlas/metadata-schema/) - ### [type/biomaterial/donor_organism.json - v17.1.0] - 2024-12-11 ### Added Added non-required gender identity field.