Release notes

Release 3.19.04

• New protocols:

  • New protocol: 3D bionotes
  • New protocol: Align volume and particles
  • New protocol: Center particles
  • New protocols: GL2D, GL2D streaming and GL2D static
  • New protocol: 2D kmeans clustering
  • New protocol: compare angles
  • New protocol: consensus 3D classes
  • New protocol: CTF consensus
  • New protocol: deep denoising
  • New protocols: Eliminate empty particles and eliminate empty classes
  • New protocol: Extract unit cell
  • New protocol: Generate reprojections
  • New protocol: metaprotocol heterogenety output, metaprotocol heterogeneity subset and metaprotocol heterogeneity
  • New protocol: Movie Max Shift
  • New protocol: particle boxsize
  • New protocol: pick noise
  • New protocol: significant heterogeneity
  • New protocol: swarm consensus intial volumes
  • New protocol: directional ResDir
  • New protocol: local monoTomo
  • New protocol: deep consensus picking
  • New protocol: screen deep learning
  • New protocol: split volume hierarchical
  • New protocol: trigger data

• New features:

  • Highres can now take a global alignment performed by any other method

• New code structure:

This release is the first one after a big re-factorization of the code in several repositories. The previous Xmipp version was inside the Scipion's repository. However, we have now splited the code in 4 Xmipp repositories:

• Xmipp Core: This repository contains the most basic software for cryo-EM (coded in C++), such us multidimensional matrices, image definition, Fast Fourier Transform, metadata management, symmetry groups, Xmipp programs...
• Xmipp Software: This repository contains image processing methods for cryo-EM, data management... (mostly coded in C++)
• Xmipp Viz: This repository contains visualizations programs for cryo-EM data, such us Movies, Micrographs, Particles, Coordinates, stack of images... (coded in java).
• Xmipp plugin: This is the plugin to be installed in Scipion.