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@INPROCEEDINGS{5474725,
author={S. {Pandey} and L. {Wu} and S. M. {Guru} and R. {Buyya}},
booktitle={2010 24th IEEE International Conference on Advanced Information Networking and Applications},
title={A Particle Swarm Optimization-Based Heuristic for Scheduling Workflow Applications in Cloud Computing Environments},
year={2010},
volume={},
number={},
pages={400-407},
keywords={groupware;Internet;particle swarm optimisation;particle swarm optimization;workflow applications scheduling;cloud computing;data retrieval;execution cost;execution time;PSO-based heuristic;computation cost;data transmission cost;best resource selection;BRS algorithm;collaborative scientific experiments;Particle swarm optimization;Processor scheduling;Cloud computing;Application software;Cost function;Computational efficiency;Dynamic scheduling;Computer science;Software engineering;Application virtualization;Workflow scheduling;particle swarm optimization;Cloud computing},
doi={10.1109/AINA.2010.31},
ISSN={2332-5658},
month={April},}
@article{doi:10.1137/0218082,
author = {Zhang, K. and Shasha, D.},
title = {Simple Fast Algorithms for the Editing Distance between Trees and Related Problems},
journal = {SIAM Journal on Computing},
volume = {18},
number = {6},
pages = {1245-1262},
year = {1989},
doi = {10.1137/0218082}}
@article{DBLP:journalsXu15i,
author = {Hangjun Xu},
title = {An Algorithm for Comparing Similarity Between Two Trees},
journal = {CoRR},
volume = {abs/1508.03381},
year = {2015}
}
@article {SCiccolellaSasc,
author = {Ciccolella, Simone and Gomez, Mauricio Soto and Patterson, Murray and Vedova, Gianluca Della and Hajirasouliha, Iman and Bonizzoni, Paola},
title = {Inferring Cancer Progression from Single-cell Sequencing while Allowing Mutation Losses},
elocation-id = {268243},
year = {2018},
doi = {10.1101/268243},
publisher = {Cold Spring Harbor Laboratory},
journal = {bioRxiv}
}
@misc{cancerstats,
title={Cancer Statistics},
url={https://www.cancer.gov/about-cancer/understanding/statistics},
journal={National Cancer Institute}
}
@misc{mygithub,
title={GitHub Profile - IAL32},
url={https://github.com/IAL32}
}
@misc{worldindatacancer,
title={OurWorldInData - Cancer},
url={https://ourworldindata.org/cancer},
journal={Our World in Data},
author={Roser, Max and Ritchie, Hannah},
year={2015},
month={07}
}
@misc{leadingcausescancer:online,
author = {},
title = {Cancer Key Facts},
url = {https://www.who.int/en/news-room/fact-sheets/detail/cancer},
month = {September},
year = {2018}
}
@article{sifit,
title={SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models},
author={Zafar, Hamim and Tzen, Anthony and Navin, Nicholas and Chen, Ken and Nakhleh, Luay},
journal={Genome biology},
volume={18},
number={1},
pages={178},
year={2017},
publisher={BioMed Central},
doi={10.1186/s13059-017-1311-2}
}
@misc{whatisacell:online,
author = {},
title = {What is a cell? - Genetics Home Reference - NIH},
url = {https://ghr.nlm.nih.gov/primer/basics/cell},
month = {},
year = {}
}
@misc{WhatisDN79:online,
author = {},
title = {What is DNA? - Genetics Home Reference - NIH},
url = {https://ghr.nlm.nih.gov/primer/basics/dna},
month = {},
year = {}
}
@misc{DNAReplication,
author={Cooper GM.},
title={The Cell: A Molecular Approach. 2nd edition - DNA Replication},
url={https://www.ncbi.nlm.nih.gov/books/NBK9940/}
}
@misc{differencecancertumor:online,
title = {What is the Difference Between Cancer and a Tumor? | Dana-Farber Cancer Institute},
url= {https://blog.dana-farber.org/insight/2018/05/difference-cancer-tumor/},
month = {},
year = {}
}
@INPROCEEDINGS{pso,
author={J. {Kennedy} and R. {Eberhart}},
title={Particle swarm optimization},
year={1995},
volume={4},
pages={1942-1948 vol.4},
doi={10.1109/ICNN.1995.488968},
month={11}
}
@ARTICLE{intratumoral,
AUTHOR={Stanta, Giorgio and Bonin, Serena},
TITLE={Overview on Clinical Relevance of Intra-Tumor Heterogeneity},
JOURNAL={Frontiers in Medicine},
VOLUME={5},
PAGES={85},
YEAR={2018},
DOI={10.3389/fmed.2018.00085},
ISSN={2296-858X}
}
@article{efficiencymcmc,
author = {Lakner, Clemens and van der Mark, Paul and Huelsenbeck, John P. and Larget, Bret and Ronquist, Fredrik},
title = "{Efficiency of Markov Chain Monte Carlo Tree Proposals in Bayesian Phylogenetics}",
journal = {Systematic Biology},
volume = {57},
number = {1},
pages = {86-103},
year = {2008},
month = {02},
issn = {1063-5157},
doi = {10.1080/10635150801886156}
}
@Article{scite,
author="Jahn, Katharina
and Kuipers, Jack
and Beerenwinkel, Niko",
title="Tree inference for single-cell data",
journal="Genome Biology",
year="2016",
month="May",
day="05",
volume="17",
number="1",
pages="86",
issn="1474-760X",
doi="10.1186/s13059-016-0936-x",
}
@Article{phylogenylinguistical,
author={J{\"a}ger, Gerhard},
title={Global-scale phylogenetic linguistic inference from lexical resources},
journal={Scientific Data},
year={2018},
month={Oct},
day={09},
publisher={The Author(s) SN -},
volume={5},
pages={180189 EP -},
doi="10.1038/sdata.2018.189"
}
@article{Matsumoto:MersenneTwister,
author = {Matsumoto, Makoto and Nishimura, Takuji},
title = {Mersenne Twister: A 623-dimensionally Equidistributed Uniform Pseudo-random Number Generator},
journal = {ACM Trans. Model. Comput. Simul.},
issue_date = {Jan. 1998},
volume = {8},
number = {1},
month = jan,
year = {1998},
issn = {1049-3301},
pages = {3--30},
numpages = {28},
doi = {10.1145/272991.272995},
acmid = {272995},
publisher = {ACM},
address = {New York, NY, USA},
keywords = {k-distribution, m-sequences, GFSR, MT19937, Mersenne primes, Mersenne twister, TGFSR, finite fields, incomplete array, inversive-decimation method, multiple-recursive matrix method, primitive polynomials, random number generation, tempering},
}
@incollection{designanalogsapso,
author = {Tiago Oliveira Weber and Wilhelmus A. M. Van Noije},
title = {Design of Analog Integrated Circuits using Simulated Annealing/Quenching with Crossovers and Particle Swarm Optimization},
booktitle = {Simulated Annealing},
publisher = {IntechOpen},
address = {Rijeka},
year = {2012},
editor = {Marcos de Sales Guerra Tsuzuki},
chapter = {11},
doi = {10.5772/50384}
}