Merge pull request #209 from dominikl/download_info

Add file path info to download page

Author: pwalczysko

_includes/filezilla.md

@@ -78,3 +78,19 @@ The left-hand pane is showing your local machine folders. Select the folder into
 In the right-hand pane, browse the IDR studies to be downloaded. Check the sizes of the folders using the README files. Click onto a folder and expand it. Right-click on the desired folder or file and click `Download` in the context menu.
 
 <img src="img/filezilla/filezilla-download.png" alt="FileZilla Desktop" width="50%" />
+
+## How to find the path for a specific Image/Plate
+
+If you want to download a specific Image/Plate:
+
+1. Navigate to the particular image in OMERO.web, e.g. https://idr.openmicroscopy.org/webclient/?show=image-14788705
+
+2. Click on the "file paths" icon in top-right corner and copy the path.
+
+3. Construct the path to use using following example:
+
+<img src="img/filezilla/file-paths.png" alt="File paths" width="50%" />
+
+The example shows that the file for this image ([15301_week8_PAS](https://idr.openmicroscopy.org/webclient/?show=image-14788705)) can be found at `idr0148-schumacher-kidneytem/20220927-Globus/0000-assay_1-light_microscopy/15301_week8_PAS.tiff`.
+
+Note: You usually can't find a path to a single image from a Plate - the path example above will list paths to ALL the images and files from that Plate, even if only one image/well is selected. The download of one image from a Plate is possible, but it can be difficult to ascertain the precise position of the downloaded image in the Plate after download. There are cases (e.g. idr0056, Flex files) where a file corresponds to a particular whole well. You can always use the path to download the whole Plate, but be mindful of the sizes of files you are trying to download.