Two images broken (Error instantiating pixel buffer)

[dominikl]

https://idr.openmicroscopy.org/webclient/img_detail/13425387/?dataset=15003
( /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack.ome.tif)

https://idr.openmicroscopy.org/webclient/img_detail/13425427/?dataset=15005
(/uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-TPR/02_638i100_640i150_405i50_x20_1_MMStack2.ome.tif)

The problem: This files reference other tifs which are not there (have been renamed). I don't know why this error shows up now, and didn't do so when the submission was imported initially. However, I tried to fix by creating symlinks with the expected file name pointing to the renamed tifs:

cd /nfs/ebi/bioimage/drop/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2
ln -s 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_10.ome.tif 01_638i100_640i150_405i50_x20_1_MMStack_10.ome.tif
ln -s 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_11.ome.tif 01_638i100_640i150_405i50_x20_1_MMStack_11.ome.tif
ln -s 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_12.ome.tif 01_638i100_640i150_405i50_x20_1_MMStack_12.ome.tif
ln -s 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_13.ome.tif 01_638i100_640i150_405i50_x20_1_MMStack_13.ome.tif
ln -s 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_1.ome.tif 01_638i100_640i150_405i50_x20_1_MMStack_1.ome.tif
ln -s 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_2.ome.tif 01_638i100_640i150_405i50_x20_1_MMStack_2.ome.tif
ln -s 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_3.ome.tif 01_638i100_640i150_405i50_x20_1_MMStack_3.ome.tif
ln -s 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_4.ome.tif 01_638i100_640i150_405i50_x20_1_MMStack_4.ome.tif
ln -s 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_5.ome.tif 01_638i100_640i150_405i50_x20_1_MMStack_5.ome.tif
ln -s 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_6.ome.tif 01_638i100_640i150_405i50_x20_1_MMStack_6.ome.tif
ln -s 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_7.ome.tif 01_638i100_640i150_405i50_x20_1_MMStack_7.ome.tif
ln -s 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_8.ome.tif 01_638i100_640i150_405i50_x20_1_MMStack_8.ome.tif
ln -s 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_9.ome.tif 01_638i100_640i150_405i50_x20_1_MMStack_9.ome.tif
ln -s 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack.ome.tif 01_638i100_640i150_405i50_x20_1_MMStack.ome.tif

cd /nfs/ebi/bioimage/drop/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-TPR
ln -s 02_638i100_640i150_405i50_x20_1_MMStack2_10.ome.tif 02_638i100_640i150_405i50_x20_1_MMStack_10.ome.tif
ln -s 02_638i100_640i150_405i50_x20_1_MMStack2_11.ome.tif 02_638i100_640i150_405i50_x20_1_MMStack_11.ome.tif
ln -s 02_638i100_640i150_405i50_x20_1_MMStack2_12.ome.tif 02_638i100_640i150_405i50_x20_1_MMStack_12.ome.tif
ln -s 02_638i100_640i150_405i50_x20_1_MMStack2_13.ome.tif 02_638i100_640i150_405i50_x20_1_MMStack_13.ome.tif
ln -s 02_638i100_640i150_405i50_x20_1_MMStack2_7.ome.tif 02_638i100_640i150_405i50_x20_1_MMStack_7.ome.tif
ln -s 02_638i100_640i150_405i50_x20_1_MMStack2_8.ome.tif 02_638i100_640i150_405i50_x20_1_MMStack_8.ome.tif
ln -s 02_638i100_640i150_405i50_x20_1_MMStack2_9.ome.tif 02_638i100_640i150_405i50_x20_1_MMStack_9.ome.tif

But the images are still broken. So I tried to reimport them, which also doesn't work. For example frist image:

Bioformats showinf doesn't have a problem:

>  BF_MAX_MEM=10G showinf -nopix /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack.ome.tif
Checking file format [OME-TIFF]
Initializing reader
OMETiffReader initializing /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack.ome.tif
Initialization took 95.05s

Reading core metadata
filename = /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack.ome.tif
Used files:
        /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack.ome.tif
        /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack_1.ome.tif
        /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack_2.ome.tif
        /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack_3.ome.tif
        /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack_4.ome.tif
        /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack_5.ome.tif
        /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack_6.ome.tif
        /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack_7.ome.tif
        /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack_8.ome.tif
        /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack_9.ome.tif
        /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack_10.ome.tif
        /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack_11.ome.tif
        /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack_12.ome.tif
        /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack_13.ome.tif
Series count = 1
Reading IFDs
Populating metadata
Series #0 :
        Image count = 171578
        RGB = false (1)
        Interleaved = false
        Indexed = false (false color)
        Width = 330
        Height = 512
        SizeZ = 1
        SizeT = 171578
        SizeC = 1
        Tile size = 336 x 512
        Thumbnail size = 82 x 128
        Endianness = intel (little)
        Dimension order = XYCZT (certain)
        Pixel type = uint16
        Valid bits per pixel = 16
        Metadata complete = true
        Thumbnail series = false
        -----
        Plane #0 <=> Z 0, C 0, T 0
        Plane #85787 <=> Z 0, C 0, T 85787
        Plane #85788 <=> Z 0, C 0, T 85788
        Plane #85789 <=> Z 0, C 0, T 85789
        Plane #85790 <=> Z 0, C 0, T 85790
        Plane #85791 <=> Z 0, C 0, T 85791
        Plane #171577 <=> Z 0, C 0, T 171577


Reading global metadata

Reading metadata

But omero import doesn't find a import:

>/opt/omero/server/OMERO.server/bin/omero import --transfer=ln_s /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack.ome.tif
Created session for demo@localhost:4064. Idle timeout: 10 min. Current group: Public
2025-04-08 13:29:34,594 2316       [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.4
2025-04-08 13:29:34,630 2352       [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 7.3.1 revision: 41e12f630ad7349caa0293cba23948c17d22732b date: 11 July 2024
2025-04-08 13:29:38,757 6479       [      main] INFO   formats.importer.cli.CommandLineImporter - Setting transfer to ln_s
2025-04-08 13:29:38,761 6483       [      main] INFO   formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
2025-04-08 13:29:39,373 7095       [      main] INFO      ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM
2025-04-08 13:32:59,699 207421     [      main] INFO      ome.formats.importer.ImportCandidates - 1 file(s) parsed into 0 group(s) with 1 call(s) to setId in 200300ms. (200326ms total) [0 unknowns]
2025-04-08 13:32:59,777 207499     [      main] INFO       ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:4064
2025-04-08 13:33:01,315 209037     [      main] INFO       ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
2025-04-08 13:33:01,627 209349     [      main] INFO       ome.formats.OMEROMetadataStoreClient - Pinging session every 300s.
2025-04-08 13:33:01,637 209359     [      main] INFO       ome.formats.OMEROMetadataStoreClient - Server: 5.6.13
2025-04-08 13:33:01,638 209360     [      main] INFO       ome.formats.OMEROMetadataStoreClient - Client: 5.7.4
2025-04-08 13:33:01,638 209360     [      main] INFO       ome.formats.OMEROMetadataStoreClient - Java Version: 23.0.2-internal
2025-04-08 13:33:01,638 209360     [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Name: Linux
2025-04-08 13:33:01,638 209360     [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
2025-04-08 13:33:01,638 209360     [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Version: 5.14.0-503.26.1.el9_5.x86_64
No imports found

But all the files are there:

> ls -lah /uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-RANBP2/ | grep 01_638i100_640i150_405i50_x20_1_MM
lrwxrwxrwx.  1  11447 idr-users    73 Mar 24 10:45 01_638i100_640i150_405i50_x20_1_MMStack_10.ome.tif -> 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_10.ome.tif
lrwxrwxrwx.  1  11447 idr-users    73 Mar 24 10:45 01_638i100_640i150_405i50_x20_1_MMStack_11.ome.tif -> 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_11.ome.tif
lrwxrwxrwx.  1  11447 idr-users    73 Mar 24 10:45 01_638i100_640i150_405i50_x20_1_MMStack_12.ome.tif -> 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_12.ome.tif
lrwxrwxrwx.  1  11447 idr-users    73 Mar 24 10:45 01_638i100_640i150_405i50_x20_1_MMStack_13.ome.tif -> 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_13.ome.tif
-rw-rw----.  1 idrftp idr-users  4.1G Apr 28  2021 01_638i100_640i150_405i50_x20_1_MMStack_1.ome.tif
-rw-rw----.  1 idrftp idr-users  4.1G Apr 28  2021 01_638i100_640i150_405i50_x20_1_MMStack_2.ome.tif
-rw-rw----.  1 idrftp idr-users  4.1G Apr 28  2021 01_638i100_640i150_405i50_x20_1_MMStack_3.ome.tif
-rw-rw----.  1 idrftp idr-users  4.1G Apr 28  2021 01_638i100_640i150_405i50_x20_1_MMStack_4.ome.tif
-rw-rw----.  1 idrftp idr-users  4.1G Apr 28  2021 01_638i100_640i150_405i50_x20_1_MMStack_5.ome.tif
-rw-rw----.  1 idrftp idr-users  4.1G Apr 28  2021 01_638i100_640i150_405i50_x20_1_MMStack_6.ome.tif
-rw-rw----.  1 idrftp idr-users  3.6G Apr 29  2021 01_638i100_640i150_405i50_x20_1_MMStack_7.ome.tif
lrwxrwxrwx.  1  11447 idr-users    72 Mar 24 10:45 01_638i100_640i150_405i50_x20_1_MMStack_8.ome.tif -> 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_8.ome.tif
lrwxrwxrwx.  1  11447 idr-users    72 Mar 24 10:45 01_638i100_640i150_405i50_x20_1_MMStack_9.ome.tif -> 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack_9.ome.tif
-rw-rw----.  1 idrftp idr-users 1020M Apr 29  2021 01_638i100_640i150_405i50_x20_1_MMStack_metadata.txt
-rw-rw----.  1 idrftp idr-users  4.1G Apr 28  2021 01_638i100_640i150_405i50_x20_1_MMStack.ome.tif

/cc @sbesson Any more ideas?

[sbesson]

$ tiffcomment 01_638i100_640i150_405i50_x20_1_locprec_10_z35_LL1-6_1_MMStack.ome.tif | xmlindent | grep "UUID Fil" | uniq
            <UUID FileName="01_638i100_640i150_405i50_x20_1_MMStack.ome.tif">
            <UUID FileName="01_638i100_640i150_405i50_x20_1_MMStack_1.ome.tif">
            <UUID FileName="01_638i100_640i150_405i50_x20_1_MMStack_2.ome.tif">
            <UUID FileName="01_638i100_640i150_405i50_x20_1_MMStack_3.ome.tif">
            <UUID FileName="01_638i100_640i150_405i50_x20_1_MMStack_4.ome.tif">
            <UUID FileName="01_638i100_640i150_405i50_x20_1_MMStack_5.ome.tif">
            <UUID FileName="01_638i100_640i150_405i50_x20_1_MMStack_6.ome.tif">
            <UUID FileName="01_638i100_640i150_405i50_x20_1_MMStack_7.ome.tif">
            <UUID FileName="01_638i100_640i150_405i50_x20_1_MMStack_8.ome.tif">
            <UUID FileName="01_638i100_640i150_405i50_x20_1_MMStack_9.ome.tif">
            <UUID FileName="01_638i100_640i150_405i50_x20_1_MMStack_10.ome.tif">
            <UUID FileName="01_638i100_640i150_405i50_x20_1_MMStack_11.ome.tif">
            <UUID FileName="01_638i100_640i150_405i50_x20_1_MMStack_12.ome.tif">
            <UUID FileName="01_638i100_640i150_405i50_x20_1_MMStack_13.ome.tif">

The files internally reference the TIFF files without the locprec_10_z35_LL1-6 namespace. In the output of showinf you can see that the current file (filename) is not included in the Used files list which is why the import candidate detection failed.

Have you tried pointing the importer at 01_638i100_640i150_405i50_x20_1_MMStack.ome.tif instead ?

[dominikl]

Of course. Thanks Seb that indeed worked 👍 Now I have to find out how to swap the existing image with the newly imported, so that the ID (and annotations etc.) will stay the same.

[dominikl]

Changing the fileset doesn't work... Tried on idr-testing with the first image.
Original image/fileset it:

Image ID: 13425387
Fileset ID: 5285337

Reimported image and fileset:

Image:15165537
Fileset:6326061

Went to the DB:

idr=> update image set fileset = 6326061 where fileset = 5285337;
UPDATE 1

Then tried render:

omero render test --force 13425387
fail: Pixels:13425387 Image:13425387 4354.257041692734 exception ::omero::ResourceError

And iViewer also still doesn't show the image (as before Error instantiating pixel buffer).

[dominikl]

I'll try IDR/idr-utils#53 from @will-moore (thanks!).

[dominikl]

It works with the swap_fileset script, but the image doesn't look right (see thumbnail how it was supposed to look like). These two images are just in a bad state. We can "fix" the error popping up, but that still doesn't fix the image.

[dominikl]

The problem is that the Image dimension of the newly imported one don't match the old one. I also now found a third broken image: https://idr.openmicroscopy.org/webclient/img_detail/13425427/?dataset=15005 (/uod/idr/filesets/idr0108-sabinina-nuclearporecomplex/20210426-Globus/SNAP-TPR/02_638i100_640i150_405i50_x20_1_MMStack2.ome.tif).

This is just weird:

tiffcomment 02_638i100_640i150_405i50_x20_1_MMStack2.ome.tif| xmlindent | grep "UUID Fil" | uniq
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_1.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_2.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_3.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_4.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_5.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_6.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_7.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_8.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_9.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_10.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_11.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_12.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_13.ome.tif">

-> I'd would need to reimport 02_638i100_640i150_405i50_x20_1_MMStack.ome.tif. But:

tiffcomment 02_638i100_640i150_405i50_x20_1_MMStack.ome.tif | xmlindent | grep "UUID Fil" | uniq
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_1.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_2.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_3.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_4.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_5.ome.tif">
            <UUID FileName="02_638i100_640i150_405i50_x20_1_MMStack_6.ome.tif">

These three broken images are just a total mess. I'd suggest to just delete them!

[dominikl]

These three images were broken, have been removed and idr0108 re-annotated.

SNAP-RANBP2
-----------
01_638i100_640i150_405i50_x20_1_MMStack.ome.tif
https://idr.openmicroscopy.org/webclient/?show=image-13425388


SNAP-TPR
--------
01_638i100_640i150_405i50_x20_1_MMStack2.ome.tif
https://idr.openmicroscopy.org/webclient/img_detail/13425445/?dataset=15005

02_638i100_640i150_405i50_x20_1_MMStack2.ome.tif
https://idr.openmicroscopy.org/webclient/img_detail/13425427/?dataset=15005

Steps ran:

omero metadata populate --context deletemap --report --wait 300 --batch 100 --localcfg '{"ns":["openmicroscopy.org/mapr/organism", "openmicroscopy.org/mapr/antibody", "openmicroscopy.org/mapr/gene", "openmicroscopy.org/mapr/cell_line", "openmicroscopy.org/mapr/phenotype", "openmicroscopy.org/mapr/sirna", "openmicroscopy.org/mapr/compound", "openmicroscopy.org/mapr/protein", "openmicroscopy.org/mapr/orf", "openmicroscopy.org/mapr/OMAP"], "typesToIgnore":["Annotation"]}' --cfg idr0108-experimentA-bulkmap-config.yml Project:1951

omero metadata populate --context deletemap --report --wait 300 --batch 100 --cfg idr0108-experimentA-bulkmap-config.yml Project:1951

omero metadata deletebulkanns Project:1951

omero delete --force Image:13425388,13425445,13425427

omero metadata populate --report --batch 1000 --file idr0108-experimentA-annotation.csv Project:1951

omero metadata populate --context bulkmap --batch 100 --cfg idr0108-experimentA-bulkmap-config.yml Project:1951

[dominikl]

As the images of this submission also cause timeout issues with the pixels microservice (resulting in "failed to load tile" errors) @jburel suggested to convert the whole submission to zarr. @francesw was wondering if also these three broken images could be converted.
And indeed that works for two of them (although raised some warnings about missing IFDs and similar). But one image couldn't be converted at all.

(bf) [dlindner@pilot-idr9999-omeroreadwrite idr0108]$ bioformats2raw --memo-directory=tmp /uod/idr/metadata/idr0108-sabinina-nuclearporecomplex/links/01_638i100_640i150_405i50_x20_1_MMStack2/01_638i100_640i150_405i50_x20_1_MMStack.ome.tif SNAP-TPR-01_638i100_640i150_405i50_x20_1_MMStack2.ome.zarr
Exception in thread "main" picocli.CommandLine$ExecutionException: Error while calling command (com.glencoesoftware.bioformats2raw.Converter@2a266d09): loci.formats.FormatException: Missing file 01_638i100_640i150_405i50_x20_1_MMStack_9.ome.tif associated with UUID urn:uuid:1d68bb49-6f8b-4bff-b359-2f288776849d.
...

Two successful ones were SNAP-TPR/02_638i100_640i150_405i50_x20_1_MMStack2.ome.tif and SNAP-RANBP2/01_638i100_640i150_405i50_x20_1_MMStack.ome.tif.