diff --git a/Makefile b/Makefile index 328e8c0..c3ea4fb 100644 --- a/Makefile +++ b/Makefile @@ -6,7 +6,7 @@ # make testall # run pytest in each venv # make clean-venvs # remove created venv directories -PYTHONS := 3.10 3.11 3.12 3.13 +PYTHONS := 3.10 3.11 3.12 3.13 # 3.14 in the near future VENV_PREFIX := .venv- CC ?= gcc export CC diff --git a/poly_lithic/scripts/main.py b/poly_lithic/scripts/main.py index df771e1..4f8db37 100644 --- a/poly_lithic/scripts/main.py +++ b/poly_lithic/scripts/main.py @@ -1,23 +1,31 @@ +""" +Main entry point for poly_lithic CLI. + +Provides backward compatibility while supporting new Click-based commands. +""" + + def main(): - import asyncio - import logging - import os - from poly_lithic.src.cli import model_main, setup - from poly_lithic.src.logging_utils import make_logger, reset_logging + """ + Main entry point that supports both old and new CLI styles. - logger = make_logger('model_manager') - logger.info('Starting model manager') + Old style (still works): + python -m poly_lithic.scripts.main --config config.yaml --debug - (args, config, broker) = setup() - print('resetting logging...') - reset_logging() + New style (recommended): + poly-lithic --config config.yaml --debug + poly-lithic run --config config.yaml + poly-lithic plugin init --name my-plugin + """ + import sys + from poly_lithic.src.cli import cli - if os.environ.get('DEBUG') == 'True': - logger = make_logger('model_manager', level=logging.DEBUG) - else: - logger = make_logger('model_manager') + # If no arguments, show help + if len(sys.argv) == 1: + sys.argv.append('--help') - asyncio.run(model_main(args, config, broker)) + # Run the Click CLI + cli() if __name__ == '__main__': diff --git a/poly_lithic/src/cli.py b/poly_lithic/src/cli.py index c49f8f1..3765280 100644 --- a/poly_lithic/src/cli.py +++ b/poly_lithic/src/cli.py @@ -1,4 +1,4 @@ -import argparse +import click import asyncio import json import logging @@ -7,207 +7,84 @@ import time import traceback -from poly_lithic.src.config import ConfigParser -from poly_lithic.src.logging_utils import get_logger, make_logger - -from poly_lithic.src.utils.builder import Builder from poly_lithic._version import __version__ +from poly_lithic.src.logging_utils import get_logger, make_logger -logger = get_logger() - -init_time = time.time() - -# if file build-info exists, set the environment variables -if os.path.exists('build-info.json'): - with open('build-info.json') as stream: - data = json.load(stream) - for key, value in data.items(): - os.environ[key] = value - -print('=' * 120) -# print(f"Commit head: {os.environ['vcs-ref']}") -# print(f"Build time: {os.environ['build-date']}") -print(f'Version: {__version__}') -print('=' * 120 + '\n') - +def import_poly_lithic_deps(): + from poly_lithic.src.config import ConfigParser + from poly_lithic.src.utils.builder import Builder -def initailize_config(config_path): - """Initialize the configuration.""" - try: - config_parser = ConfigParser(config_path) - return config_parser.parse() - except Exception as e: - logger.error(f'Error initializing configuration: {e}') - raise e +# ============================================================================ +# Helper Functions +# ============================================================================ -def env_config(env_config): - """Set the environment variables.""" - logger.debug(f'Setting environment variables from: {env_config}') - try: - # load json - with open(env_config) as stream: +def load_build_info(): + """Load build info from build-info.json if it exists.""" + if os.path.exists('build-info.json'): + with open('build-info.json') as stream: data = json.load(stream) for key, value in data.items(): os.environ[key] = value - except Exception as e: - logger.error(f'Error setting environment variables: {e}') - raise e - - -def setup(): - """Setup the model manager.""" - parser = argparse.ArgumentParser(description='Model Manager CLI') - - parser.add_argument( - '-d', - '--debug', - help='Debug mode', - required=False, - default=False, - action='store_true', - ) - - parser.add_argument( - '-c', '--config', help='Path to the configuration file', required=False - ) - parser.add_argument( - '-g', - '--model_getter', - help='Method to obtain the model', - choices=['mlflow', 'local'], - default='mlflow', - ) - # parser.add_argument( - # "-n", - # "--model_name", - # required=False, - # help="Name of the model to be loaded from mlflow", - # ) - parser.add_argument( - '-v', - '--version', - help='Print Version and exit', - required=False, - default=False, - action='store_true', - ) - parser.add_argument( - '-r', - '--reqirements', - help='reqirements install only, if True requirements.txt is obtained from the model and installed, program then exits', - required=False, - default=False, - action='store_true', - ) - # env - parser.add_argument( - '-e', - '--env', - help='Path to the environment configuration file, json format', - required=False, - ) - - parser.add_argument( - '-o', - '--one_shot', - help='One shot mode, run once and exit, helpful for debugging', - required=False, - default=False, - action='store_true', - ) - - # publish - parser.add_argument( - '-p', - '--publish', - help='Publish data to system, if True data is published, otherwise the step is skipped', - required=False, - default=False, - action='store_true', - ) - # version print and exit - # parser.add_argument( - # '-v', - # '--version', - # help='Print version and exit', - # required=False, - # default=False, - # action='store_true', - # ) - args = parser.parse_args() +def print_banner(): + """Print the startup banner.""" + width = 80 + border = click.style('=' * width, fg='green') + version = click.style(f"šŸš€ Poly-Lithic Version: {__version__} šŸš€", fg='yellow', bold=True) + click.echo(border) + click.echo(version.center(width)) + click.echo(border + "\n") - if args.version: - os.environ['version'] = __version__ - print(f'Ploy-Lithic version: {os.environ["version"]}') - sys.exit(0) - # change logger level - if args.debug: - print('Debug mode') +def setup_logging(debug): + """Setup logging based on debug flag.""" + if debug: + click.echo('Debug mode') logger = make_logger(level=logging.DEBUG) os.environ['DEBUG'] = 'True' else: - print('Info mode') + click.echo('Info mode') logger = make_logger(level=logging.INFO) os.environ['DEBUG'] = 'False' + return logger - logger.info('Model Manager CLI') - - logger.debug(f'Arguments: {args}') - - if args.publish: - logger.warning('Publishing data to system') - os.environ['PUBLISH'] = 'True' - else: - logger.warning('Not publishing data to system, to publish use -p or --publish') - os.environ['PUBLISH'] = 'False' - - # env useful when running in windows - if args.env: - env_config(args.env) - - if not args.config: - logger.info( - 'No configuration file provided, getting config from model artifacts' - ) - # check if os.environ["MODEL_CONFIG_FILE"] exists - if os.environ['MODEL_CONFIG_FILE']: - builder = Builder(args.config) - else: - raise Exception( - 'No configuration file provided, this should be done via command -c line or environment variable MODEL_CONFIG_FILE' - ) - else: - logger.info(f'Configuration file provided: {args.config}') - builder = Builder(args.config) - broker = builder.build() - - return ( - args, - builder.config, - broker, - ) +def load_env_config(env_path): + """Load environment configuration from JSON file.""" + logger = get_logger() + logger.debug(f'Setting environment variables from: {env_path}') + try: + with open(env_path) as stream: + data = json.load(stream) + for key, value in data.items(): + os.environ[key] = value + logger.info(f'Loaded {len(data)} environment variables') + except Exception as e: + logger.error(f'Error setting environment variables: {e}') + raise e async def model_main(args, config, broker): - """Main.""" - # monitor and send to transformer handle - # reintialise logger to get the correct logger and clear any previous handlers - # print("model_main") - + """ + Main async function for running the model manager. + + Args: + args: Parsed arguments namespace + config: Configuration object + broker: Broker instance + """ logger = get_logger() logger.info('Starting model manager') - - time.time() + os.environ['PUBLISH'] = str(args.publish) + try: if config.deployment.type == 'continuous': time_start = time.time() + while True: if time.time() - time_start > config.deployment.rate: time_start = time.time() @@ -215,20 +92,469 @@ async def model_main(args, config, broker): else: if len(broker.queue) > 0: broker.parse_queue() - + if len(broker.queue) > 0: broker.parse_queue() + if args.one_shot: logger.info('One shot mode, exiting') break - - await asyncio.sleep(0.01) # sleep for 10ms - + + await asyncio.sleep(0.01) + else: - raise Exception('Deployment type not supported') + raise Exception(f'Deployment type "{config.deployment.type}" not supported') + except Exception as e: - logger.error(f'Error monitoring: {traceback.format_exc()}') + logger.error(f'Error in model main loop: {traceback.format_exc()}') raise e finally: logger.info('Exiting') + + +# ============================================================================ +# CLI Commands +# ============================================================================ + +@click.group(invoke_without_command=True) +@click.pass_context +@click.version_option(version=__version__, prog_name='poly-lithic') +def cli(ctx): + """ + Poly-Lithic - A modular ML model deployment framework with plugin support. + + Run without subcommands to start the model manager (default behavior). + Use subcommands for additional functionality. + + Examples: + + poly-lithic --config config.yaml + poly-lithic --config config.yaml --debug + poly-lithic plugin init --name my-plugin + """ + load_build_info() + print_banner() + + if ctx.invoked_subcommand is None: + ctx.invoke(run_model, **ctx.params) + + +@cli.command(name='run') +@click.option('--config', '-c', type=click.Path(exists=True), + help='Path to the configuration file') +@click.option('--model-getter', '-g', + type=click.Choice(['mlflow', 'local'], case_sensitive=False), + default='mlflow', + help='Method to obtain the model') +@click.option('--debug', '-d', is_flag=True, + help='Enable debug mode') +@click.option('--env', '-e', type=click.Path(exists=True), + help='Path to environment configuration file (JSON format)') +@click.option('--one-shot', '-o', is_flag=True, + help='One shot mode - run once and exit (helpful for debugging)') +@click.option('--publish', '-p', is_flag=True, + help='Publish data to system') +@click.option('--requirements', '-r', is_flag=True, + help='Requirements install only - install requirements.txt from model and exit') +def run_model(config, model_getter, debug, env, one_shot, publish, requirements): + """ + Run the model manager with the specified configuration. + + This is the default command when no subcommand is specified. + + Examples: + + poly-lithic run --config config.yaml + poly-lithic run --config config.yaml --debug --publish + poly-lithic run --config config.yaml --one-shot + """ + try: + logger = setup_logging(debug) + logger.info('Model Manager CLI') + + if publish: + logger.warning('Publishing data to system') + os.environ['PUBLISH'] = 'True' + else: + logger.warning('Not publishing data to system. To publish, use --publish') + os.environ['PUBLISH'] = 'False' + + if env: + load_env_config(env) + + if not config: + logger.info('No configuration file provided, getting config from model artifacts') + if 'MODEL_CONFIG_FILE' not in os.environ: + raise click.ClickException( + 'No configuration file provided. Use --config or set MODEL_CONFIG_FILE environment variable' + ) + config = os.environ['MODEL_CONFIG_FILE'] + else: + logger.info(f'Configuration file provided: {config}') + + # Import heavy dependencies only when needed + from poly_lithic.src.utils.builder import Builder + + click.echo('Building model manager...') + builder = Builder(config) + broker = builder.build() + + if requirements: + click.echo('Requirements-only mode - exiting after installation') + sys.exit(0) + + import argparse + args = argparse.Namespace( + config=config, + model_getter=model_getter, + debug=debug, + env=env, + one_shot=one_shot, + publish=publish, + requirements=requirements, + ) + + logger.info('Starting model manager main loop') + asyncio.run(model_main(args, builder.config, broker)) + + except KeyboardInterrupt: + click.echo('\n\nInterrupted by user') + sys.exit(0) + except Exception as e: + click.echo(click.style(f'\nāœ— Error: {e}', fg='red'), err=True) + if debug: + traceback.print_exc() + sys.exit(1) + + +# ============================================================================ +# Plugin Commands +# ============================================================================ + +@cli.group() +def plugin(): + """ + Manage poly_lithic plugins. + + Commands for creating, listing, and managing plugins. + """ + pass + + +@plugin.command() +@click.option('--name', '-n', prompt='Plugin name', + help='Name of the plugin package') +@click.option('--author', '-a', prompt='Author name', default='', + help='Author name') +@click.option('--email', prompt='Author email', default='example@email.com', + help='Author email') +@click.option('--description', '-d', prompt='Short description', default='', + help='Plugin description') +@click.option('--output-dir', '--dir', '-o', type=click.Path(), default='.', + help='Output directory for the plugin project (default: current directory)') +@click.option('--license', default='MIT', + help='License type') +@click.option('--no-prompt', is_flag=True, + help='Skip interactive prompts (use defaults or provided values)') +def init(name, author, email, description, output_dir, license, no_prompt): + """ + Initialize a new plugin project from template. + + Creates a simple plugin project with examples of all plugin types. + Comment out the types you don't need. + + Examples: + poly-lithic plugin init --name my-plugin + poly-lithic plugin init -n my-plugin --dir ./plugins + poly-lithic plugin init --name my-plugin --no-prompt + """ + try: + from poly_lithic.src.utils.plugin_generator import PluginGenerator + from pathlib import Path + + click.echo(click.style('\nšŸš€ Creating Plugin Project\n', fg='cyan', bold=True)) + + output_path = Path(output_dir).expanduser().resolve() + plugin_dir_name = PluginGenerator._normalize_package_name(name) + + if not output_path.exists(): + if no_prompt or click.confirm(f"Directory '{output_path}' doesn't exist. Create it?", default=True): + output_path.mkdir(parents=True, exist_ok=True) + else: + click.echo("Aborted.") + sys.exit(1) + + generator = PluginGenerator() + project_path = generator.generate( + name=name, + author=author, + email=email, + description=description, + output_dir=str(output_path), + license=license, + ) + + click.echo(click.style(f"āœ“ Plugin project created: {project_path.name}", fg='green', bold=True)) + + click.echo(click.style("\nšŸ“ Next steps:", fg='yellow', bold=True)) + click.echo(f" 1. cd {project_path.name}") + click.echo(" 2. Edit the plugin files and comment out types you don't need") + click.echo(" 3. pip install -e .") + click.echo(" 4. Test the plugin: pl run --config test_deployment.yaml --debug --one-shot") + click.echo(" 5. Run tests: pytest") + + click.echo(click.style("\nšŸ’” Tips:", fg='cyan')) + click.echo(" ā€¢ The template includes examples of all three plugin types") + click.echo(" ā€¢ Comment out types you don't need in:") + click.echo(f" - {plugin_dir_name}/__init__.py") + click.echo(f" - pyproject.toml (entry points section)") + click.echo(f" - test_deployment.yaml (module configurations)") + click.echo() + + except FileExistsError as e: + click.echo(click.style(f'āœ— {e}', fg='red'), err=True) + click.echo(click.style(' Tip: Choose a different name or remove the existing directory', fg='yellow')) + sys.exit(1) + except Exception as e: + click.echo(click.style(f'āœ— Error creating plugin: {e}', fg='red'), err=True) + if os.environ.get('DEBUG') == 'True': + traceback.print_exc() + sys.exit(1) + + +@plugin.command() +@click.option('--type', '-t', 'plugin_type', + type=click.Choice(['interface', 'transformer', 'model_getter', 'all'], case_sensitive=False), + help='Filter by plugin type') +def list(plugin_type): + """ + List all available plugins. + + Shows all plugins discovered via entry points in the current environment. + + Examples: + poly-lithic plugin list + poly-lithic plugin list --type interface + """ + from poly_lithic.src.utils.plugin_registry import ( + interface_plugin_registry, + transformer_plugin_registry, + model_getter_plugin_registry, + ) + + try: + from yaspin import yaspin + from yaspin.spinners import Spinners + use_spinner = True + except ImportError: + use_spinner = False + + registries = [] + if not plugin_type or plugin_type in ['interface', 'all']: + registries.append(('Interfaces', interface_plugin_registry)) + if not plugin_type or plugin_type in ['transformer', 'all']: + registries.append(('Transformers', transformer_plugin_registry)) + if not plugin_type or plugin_type in ['model_getter', 'all']: + registries.append(('Model Getters', model_getter_plugin_registry)) + + if use_spinner: + with yaspin(Spinners.dots12, text="Discovering plugins...", color="green") as spinner: + for name, registry in registries: + spinner.text = f"Scanning {name.lower()}..." + registry.discover_plugins() + spinner.text = "Scanning complete!" + spinner.ok("āœ“") + else: + with click.progressbar(registries, label='Scanning for plugins', + bar_template='%(label)s [%(bar)s] %(info)s', + show_percent=False, show_pos=True) as bar: + for name, registry in bar: + registry.discover_plugins() + + click.echo(click.style("\nšŸ“¦ Available Plugins\n", fg='cyan', bold=True)) + + for name, registry in registries: + plugins = registry.list_plugins() + + if plugins: + click.echo(click.style(f"{name}:", fg='yellow', bold=True)) + for plugin_name in sorted(plugins): + click.echo(f" ā€¢ {plugin_name}") + click.echo() + else: + click.echo(click.style(f"{name}: None found", fg='yellow')) + click.echo() + + if not any(reg[1].list_plugins() for reg in registries): + click.echo(click.style("No plugins found", fg='yellow')) + + +@plugin.command() +@click.argument('plugin_name') +@click.option('--type', '-t', 'plugin_type', + type=click.Choice(['interface', 'transformer', 'model_getter'], case_sensitive=False), + help='Plugin type (optional, will search all if not specified)') +def info(plugin_name, plugin_type): + """ + Show detailed information about a specific plugin. + + Examples: + poly-lithic plugin info my_interface + poly-lithic plugin info my_interface --type interface + """ + from poly_lithic.src.utils.plugin_registry import ( + interface_plugin_registry, + transformer_plugin_registry, + model_getter_plugin_registry, + ) + + registries = {} + if not plugin_type or plugin_type == 'interface': + registries['interface'] = interface_plugin_registry + if not plugin_type or plugin_type == 'transformer': + registries['transformer'] = transformer_plugin_registry + if not plugin_type or plugin_type == 'model_getter': + registries['model_getter'] = model_getter_plugin_registry + + found = False + + for reg_type, registry in registries.items(): + registry.discover_plugins() + if registry.has_plugin(plugin_name): + found = True + plugin_class = registry.get(plugin_name) + + click.echo(click.style(f"\nšŸ“‹ Plugin: {plugin_name}", fg='cyan', bold=True)) + click.echo(f"Type: {reg_type}") + click.echo(f"Class: {plugin_class.__module__}.{plugin_class.__name__}") + + if plugin_class.__doc__: + click.echo(f"\nDescription:") + click.echo(f" {plugin_class.__doc__.strip()}") + + methods = [m for m in dir(plugin_class) + if not m.startswith('_') and callable(getattr(plugin_class, m))] + if methods: + click.echo(f"\nPublic Methods:") + for method in sorted(methods): + click.echo(f" ā€¢ {method}()") + + click.echo() + + if not found: + click.echo(click.style(f"āœ— Plugin '{plugin_name}' not found", fg='red'), err=True) + click.echo(click.style("\nTip: Run 'poly-lithic plugin list' to see available plugins", fg='yellow')) + sys.exit(1) + + +# ============================================================================ +# Utility Commands +# ============================================================================ + +@cli.command() +@click.argument('config_file', type=click.Path(exists=True)) +@click.option('--env', '-e', type=click.Path(exists=True), + help='Path to environment configuration file (JSON format)') +def validate(config_file, env): + """ + Validate a configuration file without running the model. + + Examples: + poly-lithic validate config.yaml + poly-lithic validate config.yaml --env env.json + """ + try: + from poly_lithic.src.config import ConfigParser + + logger = make_logger(level=logging.INFO) + + if env: + load_env_config(env) + + click.echo(f'Validating configuration file: {config_file}') + + config_parser = ConfigParser(config_file) + config = config_parser.parse() + + click.echo(click.style('āœ“ Configuration is valid', fg='green', bold=True)) + + click.echo('\nConfiguration Summary:') + click.echo(f' Deployment type: {config.deployment.type}') + click.echo(f' Deployment rate: {config.deployment.rate}') + + if hasattr(config, 'models'): + click.echo(f' Models: {len(config.models) if hasattr(config.models, "__len__") else "configured"}') + + if hasattr(config, 'variables'): + click.echo(f' Variables: {len(config.variables)}') + + if hasattr(config, 'transformers'): + click.echo(f' Transformers: {len(config.transformers) if hasattr(config.transformers, "__len__") else "configured"}') + + click.echo() + + except Exception as e: + click.echo(click.style(f'āœ— Configuration is invalid: {e}', fg='red'), err=True) + if os.environ.get('DEBUG') == 'True': + traceback.print_exc() + sys.exit(1) + + +# ============================================================================ +# Legacy Support Functions +# ============================================================================ + +def setup(): + """ + Legacy setup function for backward compatibility. + + This function is kept for existing code that imports and calls setup(). + New code should use the Click CLI directly. + """ + import argparse + + parser = argparse.ArgumentParser(description='Model Manager CLI') + + parser.add_argument('-d', '--debug', action='store_true', help='Debug mode') + parser.add_argument('-c', '--config', help='Path to the configuration file') + parser.add_argument('-g', '--model_getter', choices=['mlflow', 'local'], default='mlflow') + parser.add_argument('-v', '--version', action='store_true', help='Print version and exit') + parser.add_argument('-r', '--requirements', action='store_true') + parser.add_argument('-e', '--env', help='Path to environment configuration file') + parser.add_argument('-o', '--one_shot', action='store_true') + parser.add_argument('-p', '--publish', action='store_true') + + args = parser.parse_args() + + if args.version: + print(f'Poly-Lithic version: {__version__}') sys.exit(0) + + logger = setup_logging(args.debug) + + if args.publish: + os.environ['PUBLISH'] = 'True' + else: + os.environ['PUBLISH'] = 'False' + + if args.env: + load_env_config(args.env) + + if not args.config and 'MODEL_CONFIG_FILE' not in os.environ: + raise Exception('No configuration file provided') + + from poly_lithic.src.utils.builder import Builder + + config = args.config or os.environ['MODEL_CONFIG_FILE'] + builder = Builder(config) + broker = builder.build() + + return args, builder.config, broker + + +# ============================================================================ +# Main Entry Point +# ============================================================================ + +if __name__ == '__main__': + cli() diff --git a/poly_lithic/src/config/config_object.py b/poly_lithic/src/config/config_object.py index 97230e7..03ff9e3 100644 --- a/poly_lithic/src/config/config_object.py +++ b/poly_lithic/src/config/config_object.py @@ -1,13 +1,14 @@ from typing import Any, Optional, Union -from pydantic import computed_field +from pydantic import computed_field, field_validator import pydantic import networkx as nx -from ..transformers import registered_transformers from matplotlib import pyplot as plt from uuid import uuid4 import os import logging +from ..transformers import registered_transformers + allowed_transformers = list(registered_transformers.keys()) diff --git a/poly_lithic/src/interfaces/__init__.py b/poly_lithic/src/interfaces/__init__.py index 42d496f..c94816d 100644 --- a/poly_lithic/src/interfaces/__init__.py +++ b/poly_lithic/src/interfaces/__init__.py @@ -1,26 +1,25 @@ -from poly_lithic.src.utils.lazyInterfaceLoader import AbstractInterfaceLoader +""" +Interfaces module. +""" +from poly_lithic.src.interfaces.BaseInterface import BaseInterface, BaseDataInterface +from poly_lithic.src.interfaces.file_interface import h5dfInterface +from poly_lithic.src.interfaces.p4p_interface import SimplePVAInterface, SimplePVAInterfaceServer +from poly_lithic.src.interfaces.k2eg_interface import K2EGInterface -class InterfaceLoader(AbstractInterfaceLoader): - def __init__(self): - super().__init__() +registered_interfaces = { + 'file': h5dfInterface, + 'p4p': SimplePVAInterface, + 'p4p_server': SimplePVAInterfaceServer, + 'k2eg': K2EGInterface, +} - def keys(self): - return ['k2eg', 'p4p', 'p4p_server', 'h5df'] - - def _load_interface(self, key): - if key == 'k2eg': - return self.import_module('.interfaces.k2eg_interface', 'K2EGInterface') - elif key == 'p4p': - return self.import_module('.interfaces.p4p_interface', 'SimplePVAInterface') - elif key == 'p4p_server': - return self.import_module( - '.interfaces.p4p_interface', 'SimlePVAInterfaceServer' - ) - elif key == 'h5df': - return self.import_module('.interfaces.file_interface', 'h5dfInterface') - else: - raise KeyError(f"Interface '{key}' not registered.") - - -registered_interfaces = InterfaceLoader() +__all__ = [ + 'BaseInterface', + 'BaseDataInterface', + 'h5dfInterface', + 'SimplePVAInterface', + 'SimplePVAInterfaceServer', + 'K2EGInterface', + 'registered_interfaces', +] \ No newline at end of file diff --git a/poly_lithic/src/interfaces/p4p_interface.py b/poly_lithic/src/interfaces/p4p_interface.py index 193197f..8dd1b53 100644 --- a/poly_lithic/src/interfaces/p4p_interface.py +++ b/poly_lithic/src/interfaces/p4p_interface.py @@ -126,7 +126,7 @@ def close(self): self.ctxt.close() -class SimlePVAInterfaceServer(SimplePVAInterface): +class SimplePVAInterfaceServer(SimplePVAInterface): """ Simple PVA integfcae with a server rather than just a client, this will host the PVs provided in the config """ diff --git a/poly_lithic/src/model_utils/MlflowModelGetter.py b/poly_lithic/src/model_utils/MlflowModelGetter.py index 7cc4edc..e1a2c7c 100644 --- a/poly_lithic/src/model_utils/MlflowModelGetter.py +++ b/poly_lithic/src/model_utils/MlflowModelGetter.py @@ -1,18 +1,11 @@ -import mlflow -from mlflow import MlflowClient -from mlflow.models.model import get_model_info from poly_lithic.src.logging_utils import get_logger from poly_lithic.src.model_utils import ModelGetterBase import warnings -# not implemented error -import sys - logger = get_logger() try: from lume_model.models import TorchModel, TorchModule - LUME_MODEL_AVAILABLE = True except ImportError: logger.warning( @@ -23,7 +16,16 @@ class MLflowModelGetterLegacy(ModelGetterBase): def __init__(self, config): - # raise a futture warning if legacy model getter is used + # Import mlflow only when instantiating the class + import mlflow + from mlflow.tracking import MlflowClient + from mlflow.models.model import get_model_info + + # Store imports as instance attributes for use in methods + self.mlflow = mlflow + self.MlflowClient = MlflowClient + self.get_model_info = get_model_info + if self.__class__ == MLflowModelGetterLegacy: warnings.warn( 'MLflowModelGetterLegacy is unmaintained. Use MLflowModelGetter instead.', @@ -31,7 +33,6 @@ def __init__(self, config): ) model_name = config['model_name'] - # either supply version or URI if 'model_version' in config.keys(): model_version = config['model_version'] model_uri = None @@ -43,7 +44,6 @@ def __init__(self, config): logger.debug(f'MLflowModelGetter: {model_name}, {model_version}') self.model_name = model_name - self.model_version = model_version self.model_uri = model_uri self.client = MlflowClient() @@ -51,16 +51,14 @@ def __init__(self, config): self.tags = None def get_requirements(self): - # Get dependencies - if int(self.model_version) >= 0: version = self.client.get_model_version(self.model_name, self.model_version) - elif self.model_version == 'champion': # this is stupid I need to change it + elif self.model_version == 'champion': version_no = self.client.get_model_version_by_alias( self.model_name, self.model_version ) version = self.client.get_model_version(self.model_name, version_no.version) - else : + else: raise ValueError( f'Invalid model version: {self.model_version}. Must be a non-negative integer or "champion".' ) @@ -68,7 +66,7 @@ def get_requirements(self): raise ValueError( f'Model version {self.model_version} not found for model {self.model_name}.' ) - deps = mlflow.artifacts.download_artifacts(f'{version.source}/requirements.txt') + deps = self.mlflow.artifacts.download_artifacts(f'{version.source}/requirements.txt') return deps def get_model(self): @@ -82,18 +80,15 @@ def get_model(self): 'Either model_version and model name or model_uri must be supplied' ) - # flavor - flavor = get_model_info(model_uri=model_uri).flavors + flavor = self.get_model_info(model_uri=model_uri).flavors loader_module = flavor['python_function']['loader_module'] logger.debug(f'Loader module: {loader_module}') if loader_module == 'mlflow.pyfunc.model': logger.debug('Loading pyfunc model') - model_pyfunc = mlflow.pyfunc.load_model(model_uri=model_uri) + model_pyfunc = self.mlflow.pyfunc.load_model(model_uri=model_uri) - # check if model has.get_lume_model() method if not hasattr(model_pyfunc.unwrap_python_model(), 'get_lume_model'): - # check if it has get__model() method if not hasattr(model_pyfunc.unwrap_python_model(), 'get_model'): raise Exception( 'Model does not have get_lume_model() or get_model() method' @@ -114,7 +109,7 @@ def get_model(self): elif loader_module == 'mlflow.pytorch': print('Loading torch model') - model_torch_module = mlflow.pytorch.load_model(model_uri=model_uri) + model_torch_module = self.mlflow.pytorch.load_model(model_uri=model_uri) assert isinstance(model_torch_module, TorchModule) model = model_torch_module.model assert isinstance(model, TorchModel) @@ -127,12 +122,9 @@ def get_model(self): class MLflowModelGetter(MLflowModelGetterLegacy): def __init__(self, config): - # Call parent class initialization first super().__init__(config) def get_model(self): - - # we onlu need to verify the model is a pyfunc model if self.model_uri is not None: model_uri = self.model_uri elif self.model_version is not None: @@ -143,27 +135,17 @@ def get_model(self): 'Either model_version and model name or model_uri must be supplied' ) - # flavor - flavor = get_model_info(model_uri=model_uri).flavors + flavor = self.get_model_info(model_uri=model_uri).flavors loader_module = flavor['python_function']['loader_module'] logger.debug(f'Loader module: {loader_module}') if loader_module == 'mlflow.pyfunc.model': - # load the model - mlflow_model = mlflow.pyfunc.load_model( - model_uri=model_uri - ) - - # access the wrapped Python Pyfunc model + mlflow_model = self.mlflow.pyfunc.load_model(model_uri=model_uri) model = mlflow_model.unwrap_python_model() - # res = model.evaluate({"x": 0, "y": 0}) # test if the model has an evaluate method - # print(f'Model evaluation result: {res}') # cant test becuse of mlflow wierdness else: raise TypeError( f'Expected a pyfunc model, but got {loader_module}.' ) - # validate that the model has an evaluate method logger.debug(f'Model: {model}, Model type: {type(model)}') - return model \ No newline at end of file diff --git a/poly_lithic/src/model_utils/__init__.py b/poly_lithic/src/model_utils/__init__.py index 88fc99a..eed65ad 100644 --- a/poly_lithic/src/model_utils/__init__.py +++ b/poly_lithic/src/model_utils/__init__.py @@ -1,24 +1,23 @@ -registered_model_getters = {} -# stole this way from lume model +""" +Model utilities module. +""" -# base class from poly_lithic.src.model_utils.ModelGetterBase import ModelGetterBase +from poly_lithic.src.model_utils.MlflowModelGetter import ( + MLflowModelGetter, + MLflowModelGetterLegacy, +) +from poly_lithic.src.model_utils.LocalModelGetter import LocalModelGetter -try: - from poly_lithic.src.model_utils.MlflowModelGetter import ( - MLflowModelGetter, - MLflowModelGetterLegacy, - ) +registered_model_getters = { + 'mlflow': MLflowModelGetter, + 'mlflow_legacy': MLflowModelGetterLegacy, # Add this line + 'local': LocalModelGetter +} - registered_model_getters['mlflow_legacy'] = MLflowModelGetterLegacy - registered_model_getters['mlflow'] = MLflowModelGetter - -except Exception as e: - print(f'Error importing MLflowModelGetter: {e}') - -try: - from poly_lithic.src.model_utils.LocalModelGetter import LocalModelGetter - - registered_model_getters['local'] = LocalModelGetter -except Exception as e: - print(f'Error importing LocalModelGetter: {e}') +__all__ = [ + 'MLflowModelGetterLegacy', + 'MLflowModelGetter', + 'LocalModelGetter', + 'registered_model_getters', +] diff --git a/poly_lithic/src/transformers/CompoundTransformer.py b/poly_lithic/src/transformers/CompoundTransformer.py index e260045..a9db878 100644 --- a/poly_lithic/src/transformers/CompoundTransformer.py +++ b/poly_lithic/src/transformers/CompoundTransformer.py @@ -2,8 +2,6 @@ import time from poly_lithic.src.logging_utils.make_logger import get_logger -from poly_lithic.src.transformers import registered_transformers - from poly_lithic.src.transformers.BaseTransformer import BaseTransformer logger = get_logger() @@ -19,6 +17,8 @@ class CompoundTransformer(BaseTransformer): def __init__(self, config): + from poly_lithic.src.transformers import registered_transformers + logger.debug('Initializing CompoundTransformer') self.transformers = [] self.latest_input = {} diff --git a/poly_lithic/src/transformers/__init__.py b/poly_lithic/src/transformers/__init__.py index b8b0c62..f5e2c19 100644 --- a/poly_lithic/src/transformers/__init__.py +++ b/poly_lithic/src/transformers/__init__.py @@ -1,37 +1,27 @@ -from poly_lithic.src.utils.lazyInterfaceLoader import AbstractInterfaceLoader +""" +Transformers module. +Contains base transformer classes and built-in transformer implementations. +""" -class TransformerLoader(AbstractInterfaceLoader): - def __init__(self): - super().__init__() +from poly_lithic.src.transformers.BaseTransformer import BaseTransformer +from poly_lithic.src.transformers.CompoundTransformer import CompoundTransformer +from poly_lithic.src.transformers.BaseTransformers import SimpleTransformer +from poly_lithic.src.transformers.BaseTransformers import PassThroughTransformer +from poly_lithic.src.transformers.BaseTransformers import CAImageTransfomer - def keys(self): - return [ - 'SimpleTransformer', - 'CAImageTransfomer', - 'CompoundTransformer', - 'PassThroughTransformer', - ] +registered_transformers = { + 'SimpleTransformer': SimpleTransformer, + 'CompoundTransformer': CompoundTransformer, + 'PassThroughTransformer': PassThroughTransformer, + 'CAImageTransfomer': CAImageTransfomer, +} - def _load_interface(self, key): - if key == 'SimpleTransformer': - return self.import_module( - '.transformers.BaseTransformers', 'SimpleTransformer' - ) - elif key == 'CAImageTransfomer': - return self.import_module( - '.transformers.BaseTransformers', 'CAImageTransfomer' - ) - elif key == 'CompoundTransformer': - return self.import_module( - '.transformers.CompoundTransformer', 'CompoundTransformer' - ) - elif key == 'PassThroughTransformer': - return self.import_module( - '.transformers.BaseTransformers', 'PassThroughTransformer' - ) - else: - raise KeyError(f"Interface '{key}' not registered.") - - -registered_transformers = TransformerLoader() +__all__ = [ + 'BaseTransformer', + 'SimpleTransformer', + 'CompoundTransformer', + 'PassThroughTransformer', + 'CAImageTransfomer', + 'registered_transformers', +] \ No newline at end of file diff --git a/poly_lithic/src/utils/builder.py b/poly_lithic/src/utils/builder.py index d361d4e..2954e7e 100644 --- a/poly_lithic/src/utils/builder.py +++ b/poly_lithic/src/utils/builder.py @@ -2,6 +2,11 @@ from poly_lithic.src.interfaces import registered_interfaces from poly_lithic.src.logging_utils import get_logger from poly_lithic.src.transformers import registered_transformers +from poly_lithic.src.utils.plugin_registry import ( + interface_plugin_registry, + transformer_plugin_registry, + model_getter_plugin_registry, +) from poly_lithic.src.utils.messaging import ( ModelObserver, InterfaceObserver, @@ -65,10 +70,15 @@ def __build_observers(self): args = self.config.modules[module].module_args else: args = {} + + # Try plugin registry first, fall back to hardcoded registry + if interface_plugin_registry.has_plugin(module_subtype): + interface_class = interface_plugin_registry.get(module_subtype) + else: + interface_class = registered_interfaces[module_subtype] + interface = InterfaceObserver( - registered_interfaces[module_subtype]( - self.config.modules[module].config - ), + interface_class(self.config.modules[module].config), self.config.modules[module].pub, *args, ) @@ -78,10 +88,15 @@ def __build_observers(self): args = self.config.modules[module].module_args else: args = {} + + # Try plugin registry first, fall back to hardcoded registry + if transformer_plugin_registry.has_plugin(module_subtype): + transformer_class = transformer_plugin_registry.get(module_subtype) + else: + transformer_class = registered_transformers[module_subtype] + transformer = TransformerObserver( - registered_transformers[module_subtype]( - self.config.modules[module].config - ), + transformer_class(self.config.modules[module].config), self.config.modules[module].pub, *args, ) diff --git a/poly_lithic/src/utils/messaging.py b/poly_lithic/src/utils/messaging.py index 6a97110..771c09f 100644 --- a/poly_lithic/src/utils/messaging.py +++ b/poly_lithic/src/utils/messaging.py @@ -299,6 +299,10 @@ def update(self, message: Message) -> Message | list[Message]: return messages else: + # check if os.environ['PUBLISH'] exists and is True + if 'PUBLISH' not in os.environ: + os.environ['PUBLISH'] = 'False' + logger.debug(f'updating {self}') if os.environ['PUBLISH'] == 'True': self.interface.put_many(message.value) diff --git a/poly_lithic/src/utils/plugin_generator.py b/poly_lithic/src/utils/plugin_generator.py new file mode 100644 index 0000000..ca1f057 --- /dev/null +++ b/poly_lithic/src/utils/plugin_generator.py @@ -0,0 +1,108 @@ +""" +Plugin project generator using Jinja2 templates. +""" + +from pathlib import Path +from datetime import datetime +from jinja2 import Environment, FileSystemLoader, select_autoescape + + +class PluginGenerator: + """Generate plugin projects from Jinja2 templates.""" + + def __init__(self): + """Initialize the generator with template environment.""" + # Get the templates directory + templates_dir = Path(__file__).parent.parent.parent / 'templates' / 'plugin' + + # Setup Jinja2 environment + self.env = Environment( + loader=FileSystemLoader(str(templates_dir)), + autoescape=select_autoescape(['html', 'xml']), + trim_blocks=True, + lstrip_blocks=True, + ) + + def generate( + self, + name: str, + author: str = '', + email: str = '', + description: str = '', + output_dir: str = '.', + license: str = 'MIT', + ) -> Path: + """ + Generate a plugin project from templates. + + Args: + name: Plugin package name (will be normalized to snake_case) + author: Author name + email: Author email + description: Plugin description + output_dir: Output directory for the project + license: License type + + Returns: + Path to the generated project + """ + # Normalize names + package_name = self._normalize_package_name(name) + class_name = self._to_class_name(name) + + # Create project directory + project_path = Path(output_dir).expanduser().resolve() / package_name + if project_path.exists(): + raise FileExistsError(f"Directory {project_path} already exists") + + project_path.mkdir(parents=True) + + # Create package directory + src_path = project_path / package_name + src_path.mkdir() + + # Create tests directory + test_path = project_path / 'tests' + test_path.mkdir() + + # Template context + context = { + 'package_name': package_name, + 'class_name': class_name, + 'author': author, + 'email': email, + 'description': description or f"A poly_lithic plugin package", + 'license': license, + 'year': datetime.now().year, + } + + # Generate files from templates + self._render_template('pyproject.toml.j2', project_path / 'pyproject.toml', context) + self._render_template('README.md.j2', project_path / 'README.md', context) + self._render_template('__init__.py.j2', src_path / '__init__.py', context) + self._render_template('plugins.py.j2', src_path / 'plugins.py', context) + self._render_template('test_plugins.py.j2', test_path / 'test_plugins.py', context) + self._render_template('test_deployment.yaml.j2', project_path / 'test_deployment.yaml', context) + self._render_template('gitignore.j2', project_path / '.gitignore', context) + + # Create empty __init__.py in tests + (test_path / '__init__.py').write_text('') + + return project_path + + def _render_template(self, template_name: str, output_path: Path, context: dict): + """Render a template and write to file.""" + template = self.env.get_template(template_name) + content = template.render(**context) + output_path.write_text(content) + + @staticmethod + def _normalize_package_name(name: str) -> str: + """Normalize package name to valid Python package name.""" + return name.replace('-', '_').replace(' ', '_').lower() + + @staticmethod + def _to_class_name(name: str) -> str: + """Convert package name to PascalCase class name.""" + parts = name.replace('-', ' ').replace('_', ' ').split() + return ''.join(word.capitalize() for word in parts) \ No newline at end of file diff --git a/poly_lithic/src/utils/plugin_registry.py b/poly_lithic/src/utils/plugin_registry.py new file mode 100644 index 0000000..9686a0b --- /dev/null +++ b/poly_lithic/src/utils/plugin_registry.py @@ -0,0 +1,170 @@ +""" +Plugin Registry System for Poly-Lithic + +This module provides a plugin registration system that allows external packages +to register their own interfaces, transformers, and model getters through entry points. + +External packages can register plugins by adding entry points in their pyproject.toml: + +[project.entry-points."poly_lithic.interfaces"] +my_custom_interface = "my_package.interfaces:MyCustomInterface" + +[project.entry-points."poly_lithic.transformers"] +my_transformer = "my_package.transformers:MyTransformer" + +[project.entry-points."poly_lithic.model_getters"] +my_model_getter = "my_package.models:MyModelGetter" +""" +from typing import Any +from importlib.metadata import entry_points +import logging + +logger = logging.getLogger(__name__) + + +class PluginRegistry: + """Registry for dynamically discovered plugins via entry points.""" + + def __init__(self, group_name: str): + self.group_name = group_name + self.entry_point_group = group_name + self._plugins = {} + self._entry_points = {} + self._discovered = False + self._loaded = {} + + def discover_plugins(self): + if self._discovered: + return + + discovered = entry_points(group=self.group_name) + for ep in discovered: + self._entry_points[ep.name] = ep + self._loaded[ep.name] = False + logger.debug(f"Discovered plugin: {ep.name}") + + self._discovered = True + + def register(self, name: str, plugin_class): + self._plugins[name] = plugin_class + logger.info(f"Registered plugin: {name}") + + def has_plugin(self, name: str) -> bool: + if not self._discovered: + self.discover_plugins() + # print(self._loaded) + # print(self._plugins) + # print(self._entry_points) + return name in self._plugins or name in self._entry_points + + def list_plugins(self): + if not self._discovered: + self.discover_plugins() + return list(set(self._plugins.keys()) | set(self._entry_points.keys())) + + def unregister(self, name: str): + if name in self._plugins: + del self._plugins[name] + if name in self._entry_points: + del self._entry_points[name] + if name in self._loaded: + del self._loaded[name] + logger.info(f"Unregistered plugin: {name}") + + def get(self, name: str): + if name in self._plugins: + return self._plugins[name] + + if not self._discovered: + self.discover_plugins() + + if name in self._entry_points: + try: + plugin_class = self._entry_points[name].load() + self._plugins[name] = plugin_class + self._loaded[name] = True + logger.debug(f"Loaded plugin: {name}") + return plugin_class + except Exception as e: + logger.error(f"Failed to load plugin {name}: {e}") + raise + + raise KeyError(f"Plugin '{name}' not found") + + def __getitem__(self, name: str): + return self.get(name) + + def __contains__(self, name: str) -> bool: + return self.has_plugin(name) + + def __iter__(self): + if not self._discovered: + self.discover_plugins() + return iter(set(self._plugins.keys()) | set(self._entry_points.keys())) + + def __len__(self) -> int: + if not self._discovered: + self.discover_plugins() + return len(set(self._plugins.keys()) | set(self._entry_points.keys())) + + def keys(self): + if not self._discovered: + self.discover_plugins() + return set(self._plugins.keys()) | set(self._entry_points.keys()) + + def values(self): + if not self._discovered: + self.discover_plugins() + for name in list(self._entry_points.keys()): + if name not in self._plugins: + try: + self.get(name) + except Exception as e: + logger.warning(f"Could not load plugin {name}: {e}") + return self._plugins.values() + + def items(self): + if not self._discovered: + self.discover_plugins() + + for name in self: + try: + yield name, self.get(name) + except Exception as e: + logger.warning(f"Could not load plugin {name}: {e}") + + def get_registered_plugins(self): + if not self._discovered: + self.discover_plugins() + + for name in list(self._entry_points.keys()): + if name not in self._plugins: + try: + self.get(name) + except Exception as e: + logger.warning(f"Could not load plugin {name}: {e}") + + return dict(self._plugins) + + def clear(self): + self._plugins.clear() + self._entry_points.clear() + self._loaded.clear() + self._discovered = False + + +interface_plugin_registry = PluginRegistry("poly_lithic.interfaces") +transformer_plugin_registry = PluginRegistry("poly_lithic.transformers") +model_getter_plugin_registry = PluginRegistry("poly_lithic.model_getters") + + +def register_interface(name: str, interface_class: Any): + interface_plugin_registry.register(name, interface_class) + + +def register_transformer(name: str, transformer_class: Any): + transformer_plugin_registry.register(name, transformer_class) + + +def register_model_getter(name: str, model_getter_class: Any): + model_getter_plugin_registry.register(name, model_getter_class) diff --git a/poly_lithic/templates/plugin/README.md.j2 b/poly_lithic/templates/plugin/README.md.j2 new file mode 100644 index 0000000..1d47f1f --- /dev/null +++ b/poly_lithic/templates/plugin/README.md.j2 @@ -0,0 +1,72 @@ +{# filepath: /home/gbm96348/nfs_home/lume-deployment/poly_lithic/templates/plugin/README.md.j2 #} +# {{ package_name }} + +{{ description }} + +## Installation + +```bash +pip install -e . +``` + +## Quick Start + +Test your plugin with the included deployment configuration: + +```bash +# Run the test deployment +pl run --config test_deployment.yaml --debug + +# Or test with one-shot mode (runs once and exits) +pl run --config test_deployment.yaml --debug --one-shot +``` + +**Note:** Edit `test_deployment.yaml` and comment out the modules for plugin types you don't need. + +## Usage + +This package provides three types of plugins. Comment out the ones you don't need: + +### Interface Plugin +```python +from poly_lithic.src.utils.plugin_registry import interface_plugin_registry + +interface = interface_plugin_registry.get("{{ package_name }}_interface") +instance = interface(config) +``` + +### Transformer Plugin +```python +from poly_lithic.src.utils.plugin_registry import transformer_plugin_registry + +transformer = transformer_plugin_registry.get("{{ package_name }}_transformer") +instance = transformer(config) +``` + +### Model Getter Plugin +```python +from poly_lithic.src.utils.plugin_registry import model_getter_plugin_registry + +getter = model_getter_plugin_registry.get("{{ package_name }}_model_getter") +model = getter.load_model() +``` + +## Development + +```bash +# Install development dependencies +pip install -e ".[dev]" + +# Run tests +pytest +``` + +## Customization + +1. Edit `{{ package_name }}/plugins.py` to implement your plugin logic +2. Comment out plugin types you don't need in `{{ package_name }}/__init__.py` +3. Update `pyproject.toml` entry points to match your needs + +## License + +{{ package_name }} is released under the {{ license }} License. \ No newline at end of file diff --git a/poly_lithic/templates/plugin/__init__.py.j2 b/poly_lithic/templates/plugin/__init__.py.j2 new file mode 100644 index 0000000..511576f --- /dev/null +++ b/poly_lithic/templates/plugin/__init__.py.j2 @@ -0,0 +1,24 @@ +{# filepath: /home/gbm96348/nfs_home/lume-deployment/poly_lithic/templates/plugin/__init__.py.j2 #} +""" +{{ package_name }} - A poly_lithic plugin package. + +This package includes examples of all three plugin types. +Comment out the ones you don't need. +""" + +# Import plugin classes +from {{ package_name }}.plugins import ( + CustomInterface, + CustomTransformer, + CustomModelGetter, +) + +# Export them +__all__ = [ + 'CustomInterface', + 'CustomTransformer', + 'CustomModelGetter', +] + +# Package metadata +__version__ = "0.1.0" \ No newline at end of file diff --git a/poly_lithic/templates/plugin/gitignore.j2 b/poly_lithic/templates/plugin/gitignore.j2 new file mode 100644 index 0000000..ca1f0de --- /dev/null +++ b/poly_lithic/templates/plugin/gitignore.j2 @@ -0,0 +1,28 @@ +{# filepath: /home/gbm96348/nfs_home/lume-deployment/poly_lithic/templates/plugin/gitignore.j2 #} +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# Distribution / packaging +build/ +dist/ +*.egg-info/ + +# Testing +.pytest_cache/ +.coverage +htmlcov/ + +# Virtual environments +venv/ +.venv/ +env/ + +# IDEs +.vscode/ +.idea/ +*.swp + +# OS +.DS_Store \ No newline at end of file diff --git a/poly_lithic/templates/plugin/plugins.py.j2 b/poly_lithic/templates/plugin/plugins.py.j2 new file mode 100644 index 0000000..4241ed1 --- /dev/null +++ b/poly_lithic/templates/plugin/plugins.py.j2 @@ -0,0 +1,438 @@ +{# filepath: /home/gbm96348/nfs_home/lume-deployment/poly_lithic/templates/plugin/plugins.py.j2 #} +""" +Plugin implementations for {{ package_name }}. + +This module contains examples of all three plugin types. +Comment out or delete the ones you don't need. +""" + +import time +from typing import Dict, Any, Tuple +from poly_lithic.src.interfaces.BaseInterface import BaseInterface +from poly_lithic.src.transformers.BaseTransformers import BaseTransformer +from poly_lithic.src.model_utils.ModelGetterBase import ModelGetterBase + + +# ============================================================================ +# Interface Plugin Example +# ============================================================================ + +class CustomInterface(BaseInterface): + """ + Example interface plugin for {{ package_name }}. + + Interfaces connect to external systems for reading/writing data. + Comment out this class if you don't need an interface plugin. + """ + + def __init__(self, config: Dict[str, Any]): + """ + Initialize the interface. + + Args: + config: Configuration dictionary containing: + - variables: Dict of variable configurations + - host: Optional host/connection info + - port: Optional port number + - timeout: Optional timeout in seconds + """ + super().__init__(config) + self.config = config + self.variable_list = config.get('variables', {}) + + # TODO: Add your initialization logic here + # Example: self.client = YourClient(config.get('host'), config.get('port')) + # Example: self.timeout = config.get('timeout', 5.0) + + # For demonstration, we'll use a simple in-memory store + self._data_store = {} + + def get(self, variable: str) -> Tuple[str, Dict[str, Any]]: + """ + Get a variable value from the external system. + + Args: + variable: Variable name to read + + Returns: + Tuple of (variable_name, value_dict) where value_dict contains: + - value: The actual value + - timestamp: Unix timestamp + - status: Optional status information + """ + # TODO: Replace this with your actual get logic + # Example: + # try: + # value = self.client.read(variable) + # return variable, { + # "value": value, + # "timestamp": time.time(), + # "status": "OK" + # } + # except Exception as e: + # return variable, { + # "value": None, + # "timestamp": time.time(), + # "status": f"ERROR: {e}" + # } + + # Example implementation using in-memory store + value = self._data_store.get(variable, 0.0) + return variable, { + "value": value, + "timestamp": time.time(), + "status": "OK" + } + + def put(self, variable: str, value: Any) -> Dict[str, Any]: + """ + Set a variable value in the external system. + + Args: + variable: Variable name to write + value: Value to write + + Returns: + Dict mapping variable name to the value that was set + """ + # TODO: Replace this with your actual put logic + # Example: + # try: + # self.client.write(variable, value) + # return {variable: value} + # except Exception as e: + # raise Exception(f"Failed to write {variable}: {e}") + + # Example implementation using in-memory store + self._data_store[variable] = value + return {variable: value} + + def get_many(self, variables: list) -> Dict[str, Dict[str, Any]]: + """ + Get multiple variable values at once. + + Args: + variables: List of variable names to read + + Returns: + Dict mapping variable names to value dicts + """ + # TODO: Replace this with your actual batch get logic + # Example: + # results = {} + # for variable in variables: + # try: + # value = self.client.read(variable) + # results[variable] = { + # "value": value, + # "timestamp": time.time(), + # "status": "OK" + # } + # except Exception as e: + # results[variable] = { + # "value": None, + # "timestamp": time.time(), + # "status": f"ERROR: {e}" + # } + # return results + + # Example implementation using in-memory store + results = {} + for variable in variables: + value = self._data_store.get(variable, 0.0) + results[variable] = { + "value": value, + "timestamp": time.time(), + "status": "OK" + } + return results + + def put_many(self, variable_values: Dict[str, Any]) -> Dict[str, Any]: + """ + Set multiple variable values at once. + + Args: + variable_values: Dict mapping variable names to values + + Returns: + Dict mapping variable names to the values that were set + """ + # TODO: Replace this with your actual batch put logic + # Example: + # results = {} + # for variable, value in variable_values.items(): + # try: + # self.client.write(variable, value) + # results[variable] = value + # except Exception as e: + # raise Exception(f"Failed to write {variable}: {e}") + # return results + + # Example implementation using in-memory store + for variable, value in variable_values.items(): + self._data_store[variable] = value + return variable_values + + def monitor(self, variables: list, callback) -> None: + """ + Monitor variables for changes and call callback when they change. + + Args: + variables: List of variable names to monitor + callback: Function to call when variables change. + Should accept (variable_name, value_dict) as arguments. + """ + # TODO: Replace this with your actual monitoring logic + # Example for subscription-based monitoring: + # for variable in variables: + # self.client.subscribe(variable, lambda v, val: callback(v, { + # "value": val, + # "timestamp": time.time(), + # "status": "OK" + # })) + + # Example for polling-based monitoring: + # import threading + # def poll(): + # while self._monitoring: + # for variable in variables: + # value = self.client.read(variable) + # callback(variable, { + # "value": value, + # "timestamp": time.time(), + # "status": "OK" + # }) + # time.sleep(0.1) + # self._monitoring = True + # self._monitor_thread = threading.Thread(target=poll, daemon=True) + # self._monitor_thread.start() + + # Minimal implementation (does nothing) + pass + + def connect(self) -> None: + """ + Establish connection to the external system. + + Override this if your interface needs explicit connection management. + """ + # TODO: Add connection logic if needed + # Example: + # self.client.connect() + pass + + def disconnect(self) -> None: + """ + Close connection to the external system. + + Override this if your interface needs explicit connection management. + """ + # TODO: Add disconnection logic if needed + # Example: + # self.client.disconnect() + pass + + +# ============================================================================ +# Transformer Plugin Example +# ============================================================================ + +class CustomTransformer(BaseTransformer): + """ + Example transformer plugin for {{ package_name }}. + + Transformers modify data between reading and model input. + Comment out this class if you don't need a transformer plugin. + """ + + def __init__(self, config: Dict[str, Any]): + """ + Initialize the transformer. + + Args: + config: Configuration dictionary containing: + - scale: Optional scaling factor + - offset: Optional offset to add + - input_vars: List of input variable names + - output_vars: List of output variable names + """ + super().__init__(config) + self.config = config + + # TODO: Add your initialization logic here + # Example: self.scale = config.get('scale', 1.0) + # Example: self.offset = config.get('offset', 0.0) + # Example: self.model = load_preprocessor(config.get('model_path')) + + # Example configuration + + self.updated = False + self.scale = config.get('scale', 1.0) + self.offset = config.get('offset', 0.0) + self.input_vars = config.get('input_vars', []) + self.output_vars = config.get('output_vars', []) + + def transform(self, input_data: Dict[str, Any]) -> Dict[str, Any]: + """ + Transform input data. + + Args: + input_data: Dictionary of variable names to values + + Returns: + Dictionary of transformed variable names to values + """ + # TODO: Implement your transformation logic + + # Example 1 - Simple passthrough: + # return input_data + + # Example 2 - Scale and offset all values: + # return {k: v * self.scale + self.offset for k, v in input_data.items()} + + # Example 3 - Complex transformation with validation: + transformed = {} + for key, value in input_data.items(): + if isinstance(value, (int, float)): + # Apply scaling and offset to numeric values + transformed[key] = value * self.scale + self.offset + else: + # Pass through non-numeric values + transformed[key] = value + + self.updated = True + + return transformed + + def inverse_transform(self, output_data: Dict[str, Any]) -> Dict[str, Any]: + """ + Apply inverse transformation to output data. + + Args: + output_data: Dictionary of variable names to values + + Returns: + Dictionary of inverse-transformed variable names to values + """ + # TODO: Implement inverse transformation if needed + + # Example - inverse of scale and offset: + inverse_transformed = {} + for key, value in output_data.items(): + if isinstance(value, (int, float)) and self.scale != 0: + inverse_transformed[key] = (value - self.offset) / self.scale + else: + inverse_transformed[key] = value + + return inverse_transformed + + +# ============================================================================ +# Model Getter Plugin Example +# ============================================================================ + +class CustomModelGetter(ModelGetterBase): + """ + Example model getter plugin for {{ package_name }}. + + Model getters load ML models from various sources. + Comment out this class if you don't need a model getter plugin. + """ + + def __init__(self, config: Dict[str, Any]): + """ + Initialize the model getter. + + Args: + config: Configuration dictionary containing: + - model_path: Path to the model file + - model_type: Type of model (e.g., 'pytorch', 'tensorflow', 'sklearn') + - device: Optional device for loading (e.g., 'cpu', 'cuda') + - model_name: Optional model name for model registry + - version: Optional model version + """ + super().__init__(config) + self.config = config + self.model_path = config.get('model_path') + self.model_type = config.get('model_type', 'pickle') + self.device = config.get('device', 'cpu') + + # TODO: Add your initialization logic here + # Example: self.registry_url = config.get('registry_url') + # Example: self.credentials = config.get('credentials') + + def load_model(self) -> Any: + """ + Load and return the model. + + Returns: + The loaded model object (any type: PyTorch, TensorFlow, sklearn, etc.) + """ + # TODO: Implement your model loading logic + + # Example 1 - PyTorch model: + # import torch + # model = torch.load(self.model_path, map_location=self.device) + # model.eval() + # return model + + # Example 2 - TensorFlow/Keras model: + # from tensorflow import keras + # model = keras.models.load_model(self.model_path) + # return model + + # Example 3 - Scikit-learn model: + # import joblib + # model = joblib.load(self.model_path) + # return model + + # Example 4 - ONNX model: + # import onnxruntime as ort + # session = ort.InferenceSession(self.model_path) + # return session + + # Simple example implementation using pickle + import pickle + if self.model_path is None: + raise ValueError("model_path must be specified in config") + + with open(self.model_path, 'rb') as f: + model = pickle.load(f) + + return model + + def get_model_info(self) -> Dict[str, Any]: + """ + Get information about the model. + + Returns: + Dictionary containing model metadata + """ + # TODO: Implement model info retrieval + + # Example: + return { + 'model_path': self.model_path, + 'model_type': self.model_type, + 'device': self.device, + 'version': self.config.get('version', 'unknown'), + } + + def validate_model(self, model: Any) -> bool: + """ + Validate that the loaded model is correct. + + Args: + model: The loaded model object + + Returns: + True if model is valid, False otherwise + """ + # TODO: Add validation logic + + # Example - check if model has required methods: + # required_methods = ['predict', 'transform'] + # return all(hasattr(model, method) for method in required_methods) + + # Simple example - check if model is not None + return model is not None \ No newline at end of file diff --git a/poly_lithic/templates/plugin/pyproject.toml.j2 b/poly_lithic/templates/plugin/pyproject.toml.j2 new file mode 100644 index 0000000..606498b --- /dev/null +++ b/poly_lithic/templates/plugin/pyproject.toml.j2 @@ -0,0 +1,41 @@ +{# filepath: /home/gbm96348/nfs_home/lume-deployment/poly_lithic/templates/plugin/pyproject.toml.j2 #} +[build-system] +requires = ["setuptools>=61.0", "wheel"] +build-backend = "setuptools.build_meta" + +[project] +name = "{{ package_name }}" +version = "0.1.0" +description = "{{ description }}" +readme = "README.md" +requires-python = ">=3.10" +license = {text = "{{ license }}"} +authors = [ + {name = "{{ author }}", email = "{{ email }}"}, +] +dependencies = [ + "poly-lithic>=0.1.7.1", +] + +[project.optional-dependencies] +dev = [ + "pytest>=7.0", + "pytest-cov>=4.0", +] + +# Plugin entry points - comment out the ones you don't need +[project.entry-points."poly_lithic.interfaces"] +{{ package_name }}_interface = "{{ package_name }}.plugins:CustomInterface" + +[project.entry-points."poly_lithic.transformers"] +{{ package_name }}_transformer = "{{ package_name }}.plugins:CustomTransformer" + +[project.entry-points."poly_lithic.model_getters"] +{{ package_name }}_model_getter = "{{ package_name }}.plugins:CustomModelGetter" + +[tool.setuptools] +packages = ["{{ package_name }}"] + +[tool.pytest.ini_options] +testpaths = ["tests"] +python_files = ["test_*.py"] \ No newline at end of file diff --git a/poly_lithic/templates/plugin/test_deployment.yaml.j2 b/poly_lithic/templates/plugin/test_deployment.yaml.j2 new file mode 100644 index 0000000..8dfdb2c --- /dev/null +++ b/poly_lithic/templates/plugin/test_deployment.yaml.j2 @@ -0,0 +1,58 @@ +{# filepath: /home/gbm96348/nfs_home/lume-deployment/poly_lithic/templates/plugin/test_deployment.yaml.j2 #} +# Test deployment configuration for {{ package_name }} +# This is a minimal example for testing your plugin + +deployment: + type: "continuous" + rate: 1 # seconds + +modules: + # Example using your custom interface plugin + test_interface: + name: "test_interface" + type: "interface.{{ package_name }}_interface" + pub: + - "interface_output" + sub: + - "get_all" + module_args: None + config: + variables: + TEST:PV1: + name: "TEST:PV1" + default: 0 + TEST:PV2: + name: "TEST:PV2" + default: 0 + + # Example using your custom transformer plugin + test_transformer: + name: "test_transformer" + type: "transformer.{{ package_name }}_transformer" + pub: "transformer_output" + sub: "interface_output" + module_args: None + config: + symbols: + - "TEST:PV1" + - "TEST:PV2" + variables: + x: + formula: "TEST:PV1" + y: + formula: "TEST:PV2" + + # Example using your custom model getter plugin + # Uncomment and configure if you need model loading + # model: + # name: "model" + # type: "model.SimpleModel" + # pub: "model_output" + # sub: "transformer_output" + # module_args: None + # config: + # type: "{{ package_name }}_model_getter" + # model_config: + # model_path: "/path/to/model" + +# Note: Comment out the modules for plugin types you don't need diff --git a/poly_lithic/templates/plugin/test_plugins.py.j2 b/poly_lithic/templates/plugin/test_plugins.py.j2 new file mode 100644 index 0000000..6d9d84f --- /dev/null +++ b/poly_lithic/templates/plugin/test_plugins.py.j2 @@ -0,0 +1,264 @@ +{# filepath: /home/gbm96348/nfs_home/lume-deployment/poly_lithic/templates/plugin/test_plugins.py.j2 #} +""" +Tests for {{ package_name }} plugins. + +Add your tests here. Comment out tests for plugin types you don't use. +""" + +import pytest +import time +from {{ package_name }} import CustomInterface, CustomTransformer, CustomModelGetter + + +class TestCustomInterface: + """Test the interface plugin.""" + + def test_init(self): + """Test interface initialization.""" + config = { + "variables": { + "test:var1": {"name": "test:var1"}, + "test:var2": {"name": "test:var2"} + } + } + interface = CustomInterface(config) + assert interface is not None + assert interface.config == config + assert interface.variable_list == config["variables"] + + def test_get(self): + """Test getting a variable value.""" + config = {"variables": {"test:var": {"name": "test:var"}}} + interface = CustomInterface(config) + + # First get should return default value + var_name, value_dict = interface.get("test:var") + assert var_name == "test:var" + assert "value" in value_dict + assert "timestamp" in value_dict + assert "status" in value_dict + assert isinstance(value_dict["timestamp"], float) + + def test_put(self): + """Test setting a variable value.""" + config = {"variables": {"test:var": {"name": "test:var"}}} + interface = CustomInterface(config) + + # Put a value + result = interface.put("test:var", 42.5) + assert "test:var" in result + assert result["test:var"] == 42.5 + + # Verify the value was stored + var_name, value_dict = interface.get("test:var") + assert value_dict["value"] == 42.5 + + def test_put_get_roundtrip(self): + """Test that put and get work together.""" + config = {"variables": {"test:var": {"name": "test:var"}}} + interface = CustomInterface(config) + + # Put multiple values + interface.put("var1", 100) + interface.put("var2", 200) + interface.put("var3", 300) + + # Get them back + _, val1 = interface.get("var1") + _, val2 = interface.get("var2") + _, val3 = interface.get("var3") + + assert val1["value"] == 100 + assert val2["value"] == 200 + assert val3["value"] == 300 + + def test_connect_disconnect(self): + """Test connection management.""" + config = {"variables": {}} + interface = CustomInterface(config) + + # Should not raise errors + interface.connect() + interface.disconnect() + + +class TestCustomTransformer: + """Test the transformer plugin.""" + + def test_init(self): + """Test transformer initialization.""" + config = { + "scale": 2.0, + "offset": 10.0, + "input_vars": ["x", "y"], + "output_vars": ["x_scaled", "y_scaled"] + } + transformer = CustomTransformer(config) + assert transformer is not None + assert transformer.scale == 2.0 + assert transformer.offset == 10.0 + + def test_transform_default_config(self): + """Test transformation with default config.""" + config = {} + transformer = CustomTransformer(config) + + input_data = {"x": 1.0, "y": 2.0, "z": 3.0} + output = transformer.transform(input_data) + + assert output is not None + assert "x" in output + assert "y" in output + assert "z" in output + + def test_transform_with_scaling(self): + """Test transformation with scaling and offset.""" + config = {"scale": 2.0, "offset": 5.0} + transformer = CustomTransformer(config) + + input_data = {"x": 10.0, "y": 20.0} + output = transformer.transform(input_data) + + # x: 10 * 2 + 5 = 25 + # y: 20 * 2 + 5 = 45 + assert output["x"] == 25.0 + assert output["y"] == 45.0 + + def test_transform_non_numeric(self): + """Test transformation with non-numeric values.""" + config = {"scale": 2.0, "offset": 5.0} + transformer = CustomTransformer(config) + + input_data = { + "numeric": 10.0, + "string": "test", + "none": None + } + output = transformer.transform(input_data) + + # Numeric value should be transformed + assert output["numeric"] == 25.0 + # Non-numeric should pass through + assert output["string"] == "test" + assert output["none"] is None + + def test_inverse_transform(self): + """Test inverse transformation.""" + config = {"scale": 2.0, "offset": 5.0} + transformer = CustomTransformer(config) + + # Transform and inverse should be identity + input_data = {"x": 10.0, "y": 20.0} + transformed = transformer.transform(input_data) + inverse = transformer.inverse_transform(transformed) + + assert abs(inverse["x"] - input_data["x"]) < 1e-10 + assert abs(inverse["y"] - input_data["y"]) < 1e-10 + + def test_transform_inverse_roundtrip(self): + """Test that transform and inverse_transform are inverses.""" + config = {"scale": 3.0, "offset": -10.0} + transformer = CustomTransformer(config) + + original = {"a": 5.0, "b": 15.0, "c": 25.0} + transformed = transformer.transform(original) + recovered = transformer.inverse_transform(transformed) + + for key in original: + assert abs(recovered[key] - original[key]) < 1e-10 + +# commendted out for now +# class TestCustomModelGetter: +# """Test the model getter plugin.""" + +# def test_init(self): +# """Test model getter initialization.""" +# config = { +# "model_path": "/path/to/model.pkl", +# "model_type": "sklearn", +# "device": "cpu" +# } +# getter = CustomModelGetter(config) +# assert getter is not None +# assert getter.model_path == "/path/to/model.pkl" +# assert getter.model_type == "sklearn" +# assert getter.device == "cpu" + +# def test_get_model_info(self): +# """Test getting model information.""" +# config = { +# "model_path": "/path/to/model.pkl", +# "model_type": "pytorch", +# "device": "cuda", +# "version": "1.0.0" +# } +# getter = CustomModelGetter(config) + +# info = getter.get_model_info() +# assert info["model_path"] == "/path/to/model.pkl" +# assert info["model_type"] == "pytorch" +# assert info["device"] == "cuda" +# assert info["version"] == "1.0.0" + +# def test_validate_model(self): +# """Test model validation.""" +# config = {"model_path": "/path/to/model.pkl"} +# getter = CustomModelGetter(config) + +# # Mock model +# class MockModel: +# def predict(self, x): +# return x + +# model = MockModel() +# assert getter.validate_model(model) is True +# assert getter.validate_model(None) is False + +# @pytest.mark.skip(reason="Requires actual model file") +# def test_load_model(self): +# """Test loading a model.""" +# # This test is skipped by default because it requires an actual model file. +# # Uncomment and modify when you have a test model available. + +# # config = {"model_path": "tests/fixtures/test_model.pkl"} +# # getter = CustomModelGetter(config) +# # model = getter.load_model() +# # assert model is not None +# # assert getter.validate_model(model) is True +# pass + +# def test_load_model_missing_path(self): +# """Test that load_model raises error when path is missing.""" +# config = {} # No model_path +# getter = CustomModelGetter(config) + +# with pytest.raises(ValueError, match="model_path must be specified"): +# getter.load_model() + + +# Integration test example +class TestPluginIntegration: + """Test integration between different plugin types.""" + + def test_interface_transformer_pipeline(self): + """Test data flow from interface through transformer.""" + # Setup interface + interface_config = {"variables": {"test:var": {"name": "test:var"}}} + interface = CustomInterface(interface_config) + + # Setup transformer + transformer_config = {"scale": 2.0, "offset": 0.0} + transformer = CustomTransformer(transformer_config) + + # Put data through interface + interface.put("test:var", 10.0) + + # Get data from interface + _, value_dict = interface.get("test:var") + + # Transform the data + input_data = {"test:var": value_dict["value"]} + transformed = transformer.transform(input_data) + + # Verify transformation + assert transformed["test:var"] == 20.0 # 10 * 2 + 0 \ No newline at end of file diff --git a/pyproject.toml b/pyproject.toml index d80d147..ccf461a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -13,33 +13,34 @@ authors = [ {"name" = "Mateusz Leputa"}, {"name" = "Kathryn Baker"}, {"name" = "Mihnea Romanovschi"}, - {"name" = "Jesse Bellister"}, ] dependencies = [ "pandas>=2.0.1", "numpy>=2.0.0", - "keras>=3.1.1", "mlflow==2.22.2", "boto3>=1.34.65", "psycopg2-binary", "k2eg>=0.2.16", "psutil>=6.0.0", "colorlog>=6.8.2", - "p4p>=4.2.1", + "p4p>=4.2.0", "pyepics>=3.5.7", "h5py>=3.12.1", - "lume-model>=2.0.0", "matplotlib>=3.10.1", "networkx>=3.4.2", "pydantic>=2.10.6", "pyyaml>=6.0.2", "requests>=2.32.3", "sympy>=1.13.1", + "jinja2>=3.1.6", + "yaspin>=3.2.0", ] [project.optional-dependencies] dev = [ "pytest", "pytest-asyncio", + "pytest-xdist", + "pytest-cov", "black", "flake8", "ruff", @@ -52,10 +53,17 @@ dev = [ "hatchling", "hatch-vcs", "torch>=2.6.0", + "lume-model>=2.0.0", ] torch = ["torch>=2.6.0", "lume-model>=2.0.0"] tensorflow = ["keras>=3.1.1", "tensorflow>=2.14.0"] tensorflow_cpu = ["keras>=3.1.1", "tensorflow-cpu>=2.14.0"] +lume = ["lume-model>=2.0.0"] +simframe-local = [ + # "simframe_services @ file:///home/gbm96348/nfs_home/simframe_services", + # Please set the path to simframe_services via an environment variable or local editable install. + # Example: "simframe_services @ file://${SIMFRAME_SERVICES_PATH}" +] [tool.hatch.version] @@ -77,9 +85,9 @@ preview = true quote-style = "single" [project.scripts] -poly_lithic = "poly_lithic.scripts.main:main" -pl = "poly_lithic.scripts.main:main" -model_manager = "poly_lithic.scripts.main:main" # legacy alias for poly_lithic +poly_lithic = "poly_lithic.src.cli:cli" +pl = "poly_lithic.src.cli:cli" +model_manager = "poly_lithic.src.cli:cli" # legacy alias for poly_lithic [tool.hatch.envs.default.env-vars] @@ -98,7 +106,13 @@ pre_install = "poly_lithic/pre_install.py" pre_install = ["pre_install"] [[tool.hatch.envs.default.pipelines.install]] -hooks = ["pre_install"] +hooks = ["pre_install"] # doesnt really work so will be moved in the future. [tool.ruff.lint] select = ["NPY201"] + +[tool.uv.sources] +# NOTE: The following dependency uses a relative path to a sibling directory. +# This will break in environments where '../pl-wrangler-simframe' does not exist. +# Intended for local development only. For CI or production, install 'pl-wrangler-simframe' from PyPI or provide the directory. +pl-wrangler-simframe = { path = "../pl-wrangler-simframe", editable = true } diff --git a/tests/pv_mapping_local.yaml b/tests/pv_mapping_local.yaml new file mode 100644 index 0000000..78ec4e5 --- /dev/null +++ b/tests/pv_mapping_local.yaml @@ -0,0 +1,71 @@ +deployment: + type: "continuous" + rate: 1 #seconds + +modules: + + p4p_server: + name: "p4p_server" # overrides the top key + type: "interface.p4p_server" + pub: "in_interface" + sub: + - "get_all" + - "out_transformer" # look we can do this now! + module_args: None # defines what arguments to pass to the module observer, if any this can inform unpacking etc + config: + EPICS_PVA_NAME_SERVERS: "localhost:5075" + variables: + LUME:MLFLOW:TEST_B: + proto: pva + name: LUME:MLFLOW:TEST_B + LUME:MLFLOW:TEST_A: + proto: pva + name: LUME:MLFLOW:TEST_A + LUME:MLFLOW:TEST_S: + proto: pva + name: LUME:MLFLOW:TEST_S + + input_transformer: + name: "input_transformer" + type: "transformer.SimpleTransformer" + pub: "in_transformer" + sub: "in_interface" + module_args: None + config: + symbols: + - "LUME:MLFLOW:TEST_B" + - "LUME:MLFLOW:TEST_A" + variables: + x: + formula: "LUME:MLFLOW:TEST_B" + y: + formula: "LUME:MLFLOW:TEST_A" + model: + name: "model" + type: "model.SimpleModel" + pub: "model" + sub: "in_transformer" + module_args: None + config: + type: "LocalModelGetter" + args: + model_path: "examples/base/local/model_definition.py" + model_factory_class: "ModelFactory" + variables: + max: + type: "scalar" + + output_transformer: + name: "output_transformer" + type: "transformer.SimpleTransformer" + pub: "out_transformer" + sub: "model" + config: + symbols: + - "output" + variables: + result: + formula: "output" + + + diff --git a/tests/test_builder.py b/tests/test_builder.py index 2b8a0d9..13e2cb3 100644 --- a/tests/test_builder.py +++ b/tests/test_builder.py @@ -14,6 +14,7 @@ def _make_builder(config_path): return _make_builder +PYTHON_VERSION = f"{os.sys.version_info.major}.{os.sys.version_info.minor}" @pytest.fixture(scope='session', autouse=True) def load_env(): @@ -43,9 +44,46 @@ def test_build(caplog, make_builder): message_broker.notify(message) +def test_local_model(caplog, make_builder): + """Test local model getter to isolate if issue is MLflow-specific.""" + # caplog.set_level(logging.DEBUG) + builder = make_builder('./tests/pv_mapping_local.yaml') + message_broker = builder.build() + caplog.set_level(logging.INFO) + builder.config.draw_routing_graph() # for debugging + + # Test the full pipeline + message = Message(topic='get_all', source='clock', value={'dummy': {'value': 1}}) + + message_broker.notify(message) + assert len(message_broker.queue) == 1 + logging.info(f"After notify: {message_broker.queue}") + + for message in message_broker.queue: + assert message.topic == 'in_interface' + + message_broker.parse_queue() + assert len(message_broker.queue) == 1 + logging.info(f"After first parse: {message_broker.queue}") + assert message_broker.queue[0].topic == 'in_transformer' + + message_broker.parse_queue() + assert len(message_broker.queue) == 1 + logging.info(f"After second parse: {message_broker.queue}") + assert message_broker.queue[0].topic == 'model' + + message_broker.parse_queue() + assert len(message_broker.queue) == 1 + logging.info(f"After third parse: {message_broker.queue}") + assert message_broker.queue[0].topic == 'out_transformer' + + message_broker.parse_queue() + assert len(message_broker.queue) == 0 # no messages left in the queue + + # only run this test if the MLflow server is reachable @pytest.mark.skipif( - os.environ.get('MLFLOW_TRACKING_URI') is None, + os.environ.get('MLFLOW_TRACKING_URI') is None or PYTHON_VERSION != '3.11', reason='MLFLOW_TRACKING_URI is not set', ) def test_mlflow_legacy(caplog, make_builder): @@ -91,7 +129,7 @@ def test_mlflow_legacy(caplog, make_builder): assert len(message_broker.queue) == 0 # no messages left in the queue @pytest.mark.skipif( - os.environ.get('MLFLOW_TRACKING_URI') is None, + os.environ.get('MLFLOW_TRACKING_URI') is None or PYTHON_VERSION != '3.11', reason='MLFLOW_TRACKING_URI is not set', ) def test_mlflow(caplog, make_builder): diff --git a/tests/test_model_getter.py b/tests/test_model_getter.py index eca2558..aef681d 100644 --- a/tests/test_model_getter.py +++ b/tests/test_model_getter.py @@ -13,4 +13,4 @@ def test_LocalModelGetter(): input_dict['x1'] = float(i) input_dict['x2'] = i * 2.0 output_dict = model.evaluate(input_dict) - assert output_dict['y'] == max(input_dict['x1'], input_dict['x2']) + assert output_dict['y'] == max(input_dict['x1'], input_dict['x2']) \ No newline at end of file diff --git a/tests/test_plugin_registry.py b/tests/test_plugin_registry.py new file mode 100644 index 0000000..b05dc3a --- /dev/null +++ b/tests/test_plugin_registry.py @@ -0,0 +1,156 @@ +""" +Unit tests for plugin_registry module. +""" + +import pytest +from unittest.mock import Mock, patch, MagicMock +from poly_lithic.src.utils.plugin_registry import PluginRegistry + + +class TestPluginRegistryHasPlugin: + """Test suite for the has_plugin method.""" + + @pytest.fixture + def registry(self): + """Create a fresh registry instance for each test.""" + return PluginRegistry("test.group") + + def test_has_plugin_not_discovered_triggers_discovery(self, registry): + """Test that has_plugin triggers discovery if not yet discovered.""" + with patch.object(registry, 'discover_plugins') as mock_discover: + registry.has_plugin('test_plugin') + mock_discover.assert_called_once() + + def test_has_plugin_already_discovered_no_rediscovery(self, registry): + """Test that has_plugin doesn't trigger discovery if already discovered.""" + registry._discovered = True + + with patch.object(registry, 'discover_plugins') as mock_discover: + registry.has_plugin('test_plugin') + mock_discover.assert_not_called() + + def test_has_plugin_in_plugins_dict(self, registry): + """Test has_plugin returns True when plugin is in _plugins dict.""" + registry._discovered = True + + mock_class = Mock() + registry._plugins['test_plugin'] = mock_class + + assert registry.has_plugin('test_plugin') is True + + def test_has_plugin_in_entry_points(self, registry): + """Test has_plugin returns True when plugin is in _entry_points.""" + registry._discovered = True + + mock_entry_point = Mock() + registry._entry_points['test_plugin'] = mock_entry_point + + assert registry.has_plugin('test_plugin') is True + + def test_has_plugin_in_both_locations(self, registry): + """Test has_plugin returns True when plugin is in both _plugins and _entry_points.""" + registry._discovered = True + + mock_class = Mock() + mock_entry_point = Mock() + registry._plugins['test_plugin'] = mock_class + registry._entry_points['test_plugin'] = mock_entry_point + + assert registry.has_plugin('test_plugin') is True + + def test_has_plugin_not_found(self, registry): + """Test has_plugin returns False when plugin is not found.""" + registry._discovered = True + + assert registry.has_plugin('nonexistent_plugin') is False + + def test_has_plugin_empty_registry(self, registry): + """Test has_plugin returns False when registry is empty.""" + registry._discovered = True + + assert registry.has_plugin('any_plugin') is False + + def test_has_plugin_case_sensitive(self, registry): + """Test has_plugin is case-sensitive.""" + registry._discovered = True + + mock_class = Mock() + registry._plugins['TestPlugin'] = mock_class + + assert registry.has_plugin('TestPlugin') is True + assert registry.has_plugin('testplugin') is False + assert registry.has_plugin('TESTPLUGIN') is False + + def test_has_plugin_with_special_characters(self, registry): + """Test has_plugin works with plugin names containing special characters.""" + registry._discovered = True + + mock_class = Mock() + registry._plugins['test-plugin_v2.0'] = mock_class + + assert registry.has_plugin('test-plugin_v2.0') is True + + def test_has_plugin_empty_string(self, registry): + """Test has_plugin with empty string.""" + registry._discovered = True + + assert registry.has_plugin('') is False + + def test_has_plugin_multiple_plugins(self, registry): + """Test has_plugin with multiple plugins in registry.""" + registry._discovered = True + + registry._plugins['plugin1'] = Mock() + registry._plugins['plugin2'] = Mock() + registry._entry_points['plugin3'] = Mock() + + assert registry.has_plugin('plugin1') is True + assert registry.has_plugin('plugin2') is True + assert registry.has_plugin('plugin3') is True + assert registry.has_plugin('plugin4') is False + + @patch('poly_lithic.src.utils.plugin_registry.entry_points') + def test_has_plugin_with_real_discovery(self, mock_entry_points): + """Test has_plugin with actual discovery process.""" + mock_ep = Mock() + mock_ep.name = 'discovered_plugin' + mock_entry_points.return_value = [mock_ep] + + registry = PluginRegistry("test.group") + + assert registry.has_plugin('discovered_plugin') is True + assert registry._discovered is True + mock_entry_points.assert_called_once_with(group="test.group") + + def test_has_plugin_after_register(self, registry): + """Test has_plugin returns True after registering a plugin.""" + registry._discovered = True + + mock_class = Mock() + registry.register('new_plugin', mock_class) + + assert registry.has_plugin('new_plugin') is True + + def test_has_plugin_after_unregister(self, registry): + """Test has_plugin returns False after unregistering a plugin.""" + registry._discovered = True + + mock_class = Mock() + registry._plugins['temp_plugin'] = mock_class + + assert registry.has_plugin('temp_plugin') is True + + registry.unregister('temp_plugin') + + assert registry.has_plugin('temp_plugin') is False + + def test_has_plugin_idempotent(self, registry): + """Test has_plugin can be called multiple times with same result.""" + registry._discovered = True + + mock_class = Mock() + 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