RC: CRAN 1.6.0 (#292)

- Start using parametrized unit testing 
- Fix vignette issues in CRAN

---------

Co-authored-by: IndrajeetPatil <[email protected]>

Author: IndrajeetPatil

.Rbuildignore

@@ -1,6 +1,7 @@
 .ls-lint.yml
 ^.*\.Rproj$
-^.gitlab-ci\.yaml$
+^.dev$
+^.gitlab-ci\.yml$
 ^API$
 ^CITATION\.cff$
 ^CODE_OF_CONDUCT\.md$
@@ -19,37 +20,34 @@
 ^WIP/.
 ^\.Rproj\.user$
 ^\.circleci$
-^\.coveralls\.yaml$
+^\.coveralls\.yml$
 ^\.covrignore$
 ^\.github$
 ^\.github/ISSUE_TEMPLATE$
 ^\.github/workflows/R\.yaml$
 ^\.github/workflows/pr-commands\.yaml$
-^\.gitsum$
 ^\.httr-oauth$
 ^\.lintr$
 ^\.pre-commit-config\.yaml$
-^\.travis\.yaml$
+^\.travis\.yml$
 ^\cache$
 ^_pkgdown\.yaml$
 ^_pkgdown\.yml$
-^appveyor\.yaml$
-^brew\-log$
+^appveyor\.yml$
 ^codecov\.yaml$
 ^codemeta\.json$
 ^cran-comments\.md$
 ^data-raw$
 ^doc$
 ^docs$
 ^gitsum$
+^hextools/.
 ^man-roxygen$
+^old/.
 ^paper.*$
 ^pkgdown$
 ^revdep$
+^shell$
 ^tests/manual$
-^tests/testmanual$
-hextools
 publication/*
 references.bib
-shell
-tests\^spelling

vignettes/stats_details.Rmd .dev/stats_details.Rmdvignettes/stats_details.Rmd renamed to .dev/stats_details.Rmd

@@ -4,19 +4,26 @@ output:
   rmarkdown::html_vignette:
     toc: true
     toc_depth: 4
+    keep_md: true
 vignette: >
   %\VignetteIndexEntry{Test and effect size details}
   %\VignetteEngine{knitr::rmarkdown}
   %\VignetteEncoding{UTF-8}
 ---
 
-```{r}
+```{r setup}
 #| label = "setup",
 #| message = FALSE,
 #| warning = FALSE,
 #| include = FALSE,
 #| echo = FALSE
-source("setup.R")
+source("../setup.R")
+
+# TODO: check if the pkgdown issue with child document path is resolved # nolint.
+# for now, run `rmarkdown::render("vignettes/web_only/stats_details.Rmd")` from root directory
+knitr::opts_chunk$set(
+  eval = if (identical(Sys.getenv("IN_PKGDOWN"), "true")) FALSE else TRUE
+)
 ```
 
 This vignette can be cited as:
@@ -38,7 +45,7 @@ Abbreviations used: CI = Confidence Interval
 
 ## Summary of functionality
 
-```{r child="../man/rmd-fragments/functionality.Rmd"}
+```{r child="../../man/rmd-fragments/functionality.Rmd"}
 ```
 
 ## Summary of tests and effect sizes
@@ -52,37 +59,37 @@ more about how one-way (between-subjects) ANOVA, you can run
 
 ### `centrality_description()`
 
-```{r child="../man/rmd-fragments/centrality_description.Rmd"}
+```{r child="../../man/rmd-fragments/centrality_description.Rmd"}
 ```
 
 ### `oneway_anova()`
 
-```{r child="../man/rmd-fragments/oneway_anova.Rmd"}
+```{r child="../../man/rmd-fragments/oneway_anova.Rmd"}
 ```
 
 ### `two_sample_test()` 
 
-```{r child="../man/rmd-fragments/two_sample_test.Rmd"}
+```{r child="../../man/rmd-fragments/two_sample_test.Rmd"}
 ```
 
 ### `one_sample_test()`
 
-```{r child="../man/rmd-fragments/one_sample_test.Rmd"}
+```{r child="../../man/rmd-fragments/one_sample_test.Rmd"}
 ```
 
 ### `corr_test()`
 
-```{r child="../man/rmd-fragments/corr_test.Rmd"}
+```{r child="../../man/rmd-fragments/corr_test.Rmd"}
 ```
 
 ### `contingency_table()`
 
-```{r child="../man/rmd-fragments/contingency_table.Rmd"}
+```{r child="../../man/rmd-fragments/contingency_table.Rmd"}
 ```
 
 ### `meta_analysis()`
 
-```{r child="../man/rmd-fragments/meta_analysis.Rmd"}
+```{r child="../../man/rmd-fragments/meta_analysis.Rmd"}
 ```
 
 ## Effect size interpretation

.github/workflows/R-CMD-check-hard.yaml

@@ -45,6 +45,7 @@ jobs:
             any::rmarkdown
             any::curl
             any::testthat
+            any::patrick
           needs: check
 
       - uses: r-lib/actions/check-r-package@v2

.github/workflows/styler.yaml

@@ -30,12 +30,11 @@ jobs:
             local::.
             r-lib/pkgapi
             r-lib/styler
-            any::roxygen2
+            r-lib/roxygen2
+            any::metaplus
             anthonynorth/roxyglobals
           needs: |
-            metaplus
-            styler
-            roxygen2
+            check
 
       - name: Enable styler cache
         run: |

.gitignore

@@ -1,5 +1,6 @@
 Meta
 doc
+docs
 # Windows image file caches
 Thumbs.db
 ehthumbs.db
@@ -37,6 +38,7 @@ $RECYCLE.BIN/
 Network Trash Folder
 Temporary Items
 # R Studio files
+*.html
 .RData
 .Rhistory
 .Rproj.user

.pre-commit-config.yaml

@@ -6,7 +6,7 @@ default_language_version:
 
 repos:
   - repo: https://github.com/lorenzwalthert/precommit
-    rev: v0.4.2
+    rev: v0.4.3
     hooks:
       - id: no-browser-statement
       - id: no-debug-statement

CITATION.cff

@@ -97,7 +97,7 @@ references:
     given-names: Mattan S.
   year: '2024'
   doi: 10.32614/CRAN.package.afex
-  version: '>= 1.3-1'
+  version: '>= 1.4-1'
 - type: software
   title: BayesFactor
   abstract: 'BayesFactor: Computation of Bayes Factors for Common Designs'
@@ -181,7 +181,7 @@ references:
     orcid: https://orcid.org/0000-0001-9560-6336
   year: '2024'
   doi: 10.32614/CRAN.package.datawizard
-  version: '>= 0.12.2'
+  version: '>= 0.12.3'
 - type: software
   title: dplyr
   abstract: 'dplyr: A Grammar of Data Manipulation'
@@ -304,7 +304,7 @@ references:
     orcid: https://orcid.org/0000-0002-9271-5075
   year: '2024'
   doi: 10.32614/CRAN.package.insight
-  version: '>= 0.20.2'
+  version: '>= 0.20.4'
 - type: software
   title: magrittr
   abstract: 'magrittr: A Forward-Pipe Operator for R'
@@ -353,7 +353,7 @@ references:
     orcid: https://orcid.org/0000-0001-9560-6336
   year: '2024'
   doi: 10.32614/CRAN.package.parameters
-  version: '>= 0.22.1'
+  version: '>= 0.22.2'
 - type: software
   title: performance
   abstract: 'performance: Assessment of Regression Models Performance'
@@ -391,7 +391,7 @@ references:
     orcid: https://orcid.org/0000-0003-4315-6788
   year: '2024'
   doi: 10.32614/CRAN.package.performance
-  version: '>= 0.12.2'
+  version: '>= 0.12.3'
 - type: software
   title: PMCMRplus
   abstract: 'PMCMRplus: Calculate Pairwise Multiple Comparisons of Mean Rank Sums
@@ -449,7 +449,6 @@ references:
     name: R Foundation for Statistical Computing
     address: Vienna, Austria
   year: '2024'
-  doi: 10.32614/CRAN.package.stats
 - type: software
   title: tibble
   abstract: 'tibble: Simple Data Frames'
@@ -510,7 +509,7 @@ references:
     given-names: Winston
   year: '2024'
   doi: 10.32614/CRAN.package.withr
-  version: '>= 3.0.0'
+  version: '>= 3.0.1'
 - type: software
   title: WRS2
   abstract: 'WRS2: A Collection of Robust Statistical Methods'
@@ -545,7 +544,7 @@ references:
   abstract: 'bayestestR: Understand and Describe Bayesian Models and Posterior Distributions'
   notes: Suggests
   url: https://easystats.github.io/bayestestR/
-  repository: https://easystats.r-universe.dev
+  repository: https://CRAN.R-project.org/package=bayestestR
   authors:
   - family-names: Makowski
     given-names: Dominique
@@ -676,6 +675,18 @@ references:
   year: '2024'
   doi: 10.32614/CRAN.package.metaplus
   version: '>= 1.0-5'
+- type: software
+  title: patrick
+  abstract: 'patrick: Parameterized Unit Testing'
+  notes: Suggests
+  url: https://github.com/google/patrick
+  repository: https://CRAN.R-project.org/package=patrick
+  authors:
+  - family-names: Quinn
+    given-names: Michael
+    email: [email protected]
+  year: '2024'
+  doi: 10.32614/CRAN.package.patrick
 - type: software
   title: rmarkdown
   abstract: 'rmarkdown: Dynamic Documents for R'
@@ -775,4 +786,3 @@ references:
     name: R Foundation for Statistical Computing
     address: Vienna, Austria
   year: '2024'
-  doi: 10.32614/CRAN.package.utils

DESCRIPTION

@@ -1,10 +1,9 @@
 Type: Package
 Package: statsExpressions
 Title: Tidy Dataframes and Expressions with Statistical Details
-Version: 1.5.5.9000
+Version: 1.6.0
 Authors@R: 
-    person("Indrajeet", "Patil", , "[email protected]", role = c("cre", "aut", "cph"),
-           comment = c(ORCID = "0000-0003-1995-6531", Twitter = "@patilindrajeets"))
+    person("Indrajeet", "Patil", , "[email protected]", role = c("cre", "aut", "cph"))
 Maintainer: Indrajeet Patil <[email protected]>
 Description: Utilities for producing dataframes with rich details for the
     most common types of statistical approaches and tests: parametric,
@@ -22,24 +21,24 @@ BugReports: https://github.com/IndrajeetPatil/statsExpressions/issues
 Depends: 
     R (>= 4.1.0)
 Imports:
-    afex (>= 1.3-1),
+    afex (>= 1.4-1),
     BayesFactor (>= 0.9.12-4.7),
     correlation (>= 0.8.5),
-    datawizard (>= 0.12.2),
+    datawizard (>= 0.12.3),
     dplyr (>= 1.1.4),
     effectsize (>= 0.8.9),
     glue (>= 1.7.0),
-    insight (>= 0.20.2),
+    insight (>= 0.20.4),
     magrittr (>= 2.0.3),
-    parameters (>= 0.22.1),
-    performance (>= 0.12.2),
+    parameters (>= 0.22.2),
+    performance (>= 0.12.3),
     PMCMRplus (>= 1.9.10),
     purrr (>= 1.0.2),
     rlang (>= 1.1.4),
     stats,
     tibble (>= 3.2.1),
     tidyr (>= 1.3.1),
-    withr (>= 3.0.0),
+    withr (>= 3.0.1),
     WRS2 (>= 1.1-6),
     zeallot (>= 0.1.0)
 Suggests:
@@ -49,6 +48,7 @@ Suggests:
     metaBMA,
     metafor,
     metaplus (>= 1.0-5),
+    patrick,
     rmarkdown,
     rstantools,
     survival,
@@ -65,4 +65,4 @@ Language: en-US
 LazyData: true
 Roxygen: list( markdown = TRUE, roclets = c("collate", "namespace", "rd",
     "pkgapi::api_roclet", "roxyglobals::global_roclet") )
-RoxygenNote: 7.3.2
+RoxygenNote: 7.3.2.9000

NEWS.md

@@ -1,4 +1,11 @@
-# statsExpressions 1.5.5.9000
+# statsExpressions 1.6.0
+
+## MAJOR CHANGES
+
+- _Test and effect size details_ vignette is now available only on the package
+  website (https://indrajeetpatil.github.io/statsExpressions/articles/).
+
+- Unused dataset has been removed: `movies_wide`.
 
 # statsExpressions 1.5.5