This script (**animaMSExamPreparationMSSEG2016.py**) combines several processing steps to preprocess a single time point containing T1, T2/PD, FLAIR and Gd T1 images using the same script that was used in the MSSEG 2016 challenge [1]. It relies on a precomputed brain mask that may be obtained from `volBrain <https://www.volbrain.upv.es>`_ (as for the challenge) or :doc:`the brain extraction scripts of Anima <segmentation_scripts>`. The script performs denoising, bias correctino, brain masking and registration to the FLAIR image as explained in [1].
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