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@@ -3,18 +3,6 @@ Open source scripts for medical image processing from the Empenn team
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This repository includes python scripts (for execution on a standalone platform and some on an [OAR](https://oar.imag.fr) cluster). Their goal is to combine several tools from [Anima public](https://github.com/Inria-Visages/Anima-Public/) to accomplish more complex tasks (atlasing, diffusion imaging, brain extraction...).
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## Installation
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## Installing, using and citing Anima scripts
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Anima-Scripts-Public only requires two packages and a data package:
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- [Python](https://www.python.org) (version >= 3.0)
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- [Anima public](https://github.com/Inria-Visages/Anima-Public/)
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- [Anima scripts data](https://github.com/Inria-Visages/Anima-Scripts-Data-Public): data required for some scripts to work (brain extraction and diffusion scripts)
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Installation requires only a few steps described in the [installation page](https://github.com/Inria-Visages/Anima-Scripts-Public/wiki/Installation)
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## Reference Anima scripts
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If you are using Anima scripts for your research, please take the time to:
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- Cite the relevant papers referenced in the other pages of this documentation wiki or in Anima
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- Add a sentence in your acknowledgments section or in the methods part of your paper referencing the [RRID](https://rrid.org) of [Anima](https://github.com/Inria-Visages/Anima-Public): RRID:SCR_017017, and the one of Anima scripts: RRID:SCR_017072 (should be written like this to ensure it is recognized by search bots)
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Please refer to our [website](https://anima.irisa.fr) and the general [documentation of Anima](https://anima.rtfd.io)

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