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Anima scripts v3.1

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@ocommowi ocommowi released this 10 May 13:56
· 15 commits to master since this release
v3.1
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Feature update release of Anima scripts

Anima scripts is a set of scripts that use Anima to perform complex preprocessing and core processing tasks on medical images. This repository is multi-platform for most scripts (as long as python is available for your system), except for atlasing scripts that require an OAR scheduler. If you are using Anima scripts for your research, please take the time to:

  • Cite the relevant papers referenced in the documentation
  • Add a sentence in your acknowledgments section or in the methods part of your paper referencing the RRID of Anima scripts: RRID:SCR_017072, and the one of Anima : RRID:SCR_017017
  • if possible, add the link to Anima website: https://anima.irisa.fr

This new release contains the following updates:

  • add MS longitudinal preprocessing script for the 2021 MS new lesions segmentation challenge
  • add patient specific pipeline for atlas based, along tract analysis of diffusion compartment models
  • anima scripts now requires Anima v4.1 as the minimum version to run all scripts

More details on the scripts are available in the documentation.

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