Change postprocess launch script

Author: youennmereljourdan

postprocess.sh

@@ -1,16 +1,13 @@
 #!/usr/bin/env bash
 
-#OAR -l walltime=2
+#OAR -l walltime=4
 #OAR -O ./log/postprocess_log_%jobid%.stdout
 #OAR -E ./log/postprocess_log_%jobid%.stderr
 #OAR -q production
 
-TAG="fmri-confs-runner"
-
 BASE="/home/ymerel/empenn_group_storage/private/ymerel"
-RESULTS="$BASE/results/auditory"
+RESULTS="$BASE/auditory_276"
 
-g5k-setup-docker -t
-docker build . -t $TAG
-docker run -u root -v "$RESULTS:/results" $TAG python postprocess.py --results /results
+pip install -r requirements.txt
+python postprocess.py --results $RESULTS
 

postprocess/postprocess_service.py

@@ -57,7 +57,7 @@ def get_mean_image(self, inputs: list, batch_size: int) -> nib.Nifti1Image:
 
         total = len(inputs)
 
-        print(f"Summing up the [{total}] images...")
+        print(f"Summing the [{total}] images...")
         for i in range(0, total, batch_size):
             batch_paths = inputs[i:i + batch_size]
             batch_images = [nib.load(path).get_fdata() for path in batch_paths]