Docker image #5
Description
Hi @Ivarz,
I recently created a Docker image for conifer. I thought, I'd leave it here in case it's useful for you or someone else.
# Copyright (c) 2020, Moritz E. Beber.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
FROM bitnami/minideb:buster AS builder
RUN set -eux \
&& install_packages \
build-essential \
ca-certificates \
git \
libz-dev
WORKDIR /opt
RUN set -eux \
&& git clone https://github.com/Ivarz/Conifer.git \
&& cd Conifer \
&& git submodule update --init --recursive \
&& gcc -static -std=c99 -Wall -Wextra -O3 -D_POSIX_C_SOURCE=200809L -I third_party/uthash/src -I . src/utils.c src/kraken_stats.c src/kraken_taxo.c src/main.c -o conifer -l:libm.a -l:libz.a
FROM busybox:glibc
COPY --from=builder /opt/Conifer/conifer /
ENTRYPOINT ["/conifer"]
I'll track progress of this file over here.