I/O issues on Hera (#20)

* Read-only mode for read_obsop and correct variable in test/CMakeLists.txt

* Revert to develop if branch missing for local data

* Add ENV for LOCAL_PATH_JEDI_TESTFILES

Author: benjaminmenetrier

src/saber/bump/type_obsop.F90

@@ -117,7 +117,7 @@ subroutine obsop_read(obsop,mpl,nam,geom)
 
 ! Define file
 write(filename,'(a,a,i6.6,a,i6.6)') trim(nam%prefix),'_obs_',mpl%nproc,'-',mpl%myproc
-ncid = mpl%nc_file_create_or_open(subr,trim(nam%datadir)//'/'//trim(filename)//'.nc')
+call mpl%ncerr(subr,nf90_open(trim(nam%datadir)//'/'//trim(filename)//'.nc',nf90_nowrite,ncid))
 
 ! Check grid hash
 call mpl%ncerr(subr,nf90_get_att(ncid,nf90_global,'grid_hash',grid_hash))
@@ -161,7 +161,7 @@ subroutine obsop_write(obsop,mpl,nam,geom)
 
 ! Define file
 write(filename,'(a,a,i6.6,a,i6.6)') trim(nam%prefix),'_obs_',mpl%nproc,'-',mpl%myproc
-   ncid = mpl%nc_file_create_or_open(subr,trim(nam%datadir)//'/'//trim(filename)//'.nc')
+ncid = mpl%nc_file_create_or_open(subr,trim(nam%datadir)//'/'//trim(filename)//'.nc')
 
 ! Write grid hash
 call mpl%ncerr(subr,nf90_put_att(ncid,nf90_global,'grid_hash',geom%grid_hash))

test/CMakeLists.txt

@@ -182,7 +182,11 @@ endif()
 
 # If local path to testfiles is defined don't download
 if( DEFINED ENV{LOCAL_PATH_JEDI_TESTFILES} )
-    set( SABER_TESTFILES_PATH $ENV{LOCAL_PATH_JEDI_TESTFILES}/saber/${GIT_BRANCH_SABER} )
+    if( EXISTS $ENV{LOCAL_PATH_JEDI_TESTFILES}/saber/${GIT_BRANCH_SABER} )
+        set( SABER_TESTFILES_PATH $ENV{LOCAL_PATH_JEDI_TESTFILES}/saber/${GIT_BRANCH_SABER} )
+    else()
+        set( SABER_TESTFILES_PATH $ENV{LOCAL_PATH_JEDI_TESTFILES}/saber/develop )
+    endif()
     if( NOT EXISTS ${SABER_TESTFILES_PATH}/testdata )
         message( FATAL_ERROR "Directory ${SABER_TESTFILES_PATH}/testdata is missing" )
     endif()
@@ -216,7 +220,7 @@ execute_process( COMMAND bash ${CMAKE_BINARY_DIR}/bin/saber_setup.sh
                          ${CMAKE_BINARY_DIR} )
 
 # Download SABER data
-if( NOT DEFINED LOCAL_PATH_TESTFILES_SABER )
+if( NOT DEFINED ENV{LOCAL_PATH_JEDI_TESTFILES} )
     message( STATUS "Download sources:" )
 
     # Check whether the URLs exist or not