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When reading large tif images for the jaw localisation, only read the relevant pixels and pages #88

@richard-lane

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@richard-lane

We dont need the whole 2000x500x500 pixel tiff stack to locate the jaw, we can (in principle) do it with a much smaller, downsampled version of the image. At the moment, (in my testing notebook at least), i read in the full-sized tifs and then downsample them (with a bit of anti aliasing)

it may be sufficient, and would probably be faster, to read only the required slices in

  • Check if this is actually significantly faster for a single image (if not, dont bother)
  • change the function to do that
  • check if the model still works well with the new downsampled images

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