Tagging duplicate functions for later review.

[the-mayer]

          Tagging duplicate functions for later review. 

Duplicated functions:

• addLineage() (formerly add_lins())
  • acc2lin.R
  • lineage.R
• acc2Lineage() (formerly acc2lin()
  • acc2lin.R
  • lineage.R
• efetchIPG() (formerly efetch_ipg()
  • acc2lin.R
  • lineage.R
• IPG2Lineage() (formerly ipg2lin())
  • acc2lin.R
  • lineage.R

Originally posted by @the-mayer in #65 (comment)

[the-mayer]

Organizationally, we should decide whether these functions live in acc2lin.R or lineage.R. Functionally, they appear identical.

[the-mayer]

Additionally, there seems to be duplication in CHANGED-pre-msa-tree.R and pree-msa-tree.R.

[jananiravi]

@epbrenner @the-mayer let's find msa-tree resolution time next Monday?