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<html><head>
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<link href="velvetmemcalc_files/velvetmem.css" rel="stylesheet"
type="text/css">
<link rel="stylesheet" type="text/css"
href="velvetmemcalc_files/main.css">
<script src="velvetmemcalc_files/velvetmem.js" type="text/javascript"></script>
<title>VelvetMem Ajax Caculator</title>
</head><body>
<div id="header">
<h1>Velvet Memory Calculator</h1>
</div>
<b>Does someone have an idea of how much memory would velvet require
for a given input of short reads?</b><br>
<div class="form">
<h2>Inform the De Novo parameters:</h2>
<table>
<tbody><tr>
<td>Read Size</td>
<td><input id="txtReadSize" class="textbox" name="readSize" value="50"
type="text"></td>
<td>Read size in <b>bp</b> (base pairs)</td>
</tr>
<tr>
<td>Genome Size</td>
<td><input id="txtGenomeSize" class="textbox" name="genomeSize"
value="5.0" type="text"></td>
<td>Genome size in <b>Mbp</b> (megabase pairs)</td>
</tr>
<tr>
<td>Number of reads</td>
<td><input id="txtNumReads" class="textbox" name="numReads" value="200"
type="text"></td>
<td>Number of reads in <b>millions</b>(integer number)</td>
</tr>
<tr>
<td>k</td>
<td><input id="txtK" class="textbox" name="k" value="23" type="text"></td>
<td>k-mer size (<b>parameter of Velvet</b>)</td>
</tr>
</tbody></table>
<div><button id="btnSubmit" onclick="launchVelvetMem()">Submit</button>
<!--<input type="submit" />--></div>
<hr>
<div id="velvetMem" style="visibility: hidden;">
<h2>Memory Usage and Coverage</h2>
<table>
<tbody><tr>
<td>Memory</td>
<td><span id="spMemory"></span> Gb</td>
</tr>
<tr>
<td>Coverage</td>
<td><span id="spCoverage"></span>x</td>
</tr>
</tbody></table>
</div>
</div>
<a href="#"
onclick="window.open('faq.html','velvetMemCalcFaq','width=400,height=500,location=no,directories=no,status=no,menubar=no')">browse
important notes page please !!!</a><br>
<p> This memory usage calculation is based on the information provided
by <a href="http://seqanswers.com/forums/showthread.php?t=2101"> this
thread</a> in <a href="http://seqanswers.com/">SEQAnswers</a> forum.
</p>
<!--<div id="copyright">-->
<center><span id="copyright">Copyright 2010 <a
href="http://www.google.com/profiles/varuzza" target="_blank">Leonardo
Varuzza</a> and <a href="http://www.langebio.cinvestav.mx/bioinformatica/jacob"
target="_blank">Jacob Israel</a></span></center>
<!--</div>-->
</body></html>