All notable changes to this project will be documented in this file.
The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.
- Support for parsing genome annotations in GFF format and protein sequences in FAA format.
- TA annotation of CDS using pyhmmer and curated HMM profiles.
- Grouping of CDS hits into putative toxin-antitoxin systems based on genomic proximity.
- Export of annotated CDS hits and metadata to a TSV file.
- Command-line interface (CLI) with arguments for input files, thresholds, and output configuration.