feat: indexed table class can handle more than 4 indices (#756)

* feat: indexed table class can handle more than 4 indices

* feat: default constructor for the IndexGenerator class

* restoring main class as it was

* update branch (#768)

* update to DC tracking to read and use the new TDC cuts ccdb table.

* use live database

* build: bump version number to 13.1.0 (#757)

* remove unused/defunct classes

* convert tabs to spaces

* remove unused/defunct classes

* remove long-defunct main methods

* cleanup

* switch example to hipo4

* remove hipo3 support

* remove unused/defunct classes

* cleanup, tabs/spaces, formatting, ide warnings

* cleanup, formatting, ide warnings

* cleanup, formatting, tabs/spaces, ide warnings

* cleanup, formatting, tabs/spaces, ide warnings

* remove (newly) unused dependencies

* restore object creation

* convert tabs to spaces

* cleanup

* remove no-op

* build(deps): bump org.apache.maven.plugins:maven-enforcer-plugin (#759)

* apply fine timestamp correction to leadingEdgeTime

* ahdc hit time corrected

* add modeAHDC in PulseExtractorEngine

* use wf type for hit selection

* take into account simulation

* replace string manipulation with bit operation

* comment unnecessary code lines

* use wfType 0 or 1

* fix: reduce the number of CODEOWNERS (#764)

* fix: remove unused `etc/` files (#765)

They are 7-8 years old, and it is not clear what they are; they are
apparently unused here.

---------

Co-authored-by: ziegler <[email protected]>
Co-authored-by: Nathan Baltzell <[email protected]>
Co-authored-by: raffaelladevita <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Felix Touchte Codjo <[email protected]>
Co-authored-by: Christopher Dilks <[email protected]>

* feat: can parse any byte shifts array for indexed tables

* default byte shift array can only be used for less than 4 indices

* misc fixes to compute long key and checks for byte shifts and index format

* check bin width compatible with int

* fix retrieving index from key

---------

Co-authored-by: ziegler <[email protected]>
Co-authored-by: Nathan Baltzell <[email protected]>
Co-authored-by: raffaelladevita <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Felix Touchte Codjo <[email protected]>
Co-authored-by: Christopher Dilks <[email protected]>

Author: 7 people

common-tools/clas-detector/src/main/java/org/jlab/detector/base/DetectorCollection.java

@@ -82,7 +82,7 @@ public Set<Integer> getSectors(){
         Set<Integer>  sectors = new HashSet<Integer>();
 
         for(Long item : list){
-            int sect = IndexedList.IndexGenerator.getIndex(item, 0);
+            int sect = this.collection.getIndexGenerator().getIndex(item, 0);
             sectors.add(sect);
         }
         return sectors;
@@ -97,9 +97,9 @@ public Set<Integer> getLayers(int sector){
         Set<Long>  list = this.collection.getMap().keySet();
         Set<Integer>  layers = new HashSet<Integer>();
         for(Long item : list){
-            int sect = IndexedList.IndexGenerator.getIndex(item, 0);
+            int sect = this.collection.getIndexGenerator().getIndex(item, 0);
             if(sect==sector){
-                int lay = IndexedList.IndexGenerator.getIndex(item, 1);
+                int lay = this.collection.getIndexGenerator().getIndex(item, 1);
                 layers.add(lay);
             }
         }
@@ -115,10 +115,10 @@ public Set<Integer>  getComponents(int sector, int layer){
         Set<Long>  list = this.collection.getMap().keySet();
         Set<Integer>  components = new HashSet<Integer>();
         for(Long item : list){
-            int sect = IndexedList.IndexGenerator.getIndex(item, 0);
-            int lay = IndexedList.IndexGenerator.getIndex(item, 1);
+            int sect = this.collection.getIndexGenerator().getIndex(item, 0);
+            int lay = this.collection.getIndexGenerator().getIndex(item, 1);
             if(sect==sector&&lay==layer){
-                int comp = IndexedList.IndexGenerator.getIndex(item, 2);
+                int comp = this.collection.getIndexGenerator().getIndex(item, 2);
                 components.add(comp);
             }
         }

common-tools/clas-detector/src/main/java/org/jlab/detector/calib/utils/CalibrationConstants.java

@@ -67,7 +67,7 @@ public void save(String file){
             StringBuilder str = new StringBuilder();
             for(int i = 0; i < nindex; i++){
                 str.append(
-                        String.format("%3d ",IndexedList.IndexGenerator.getIndex(entry.getKey(),i)));
+                        String.format("%3d ",this.getList().getIndexGenerator().getIndex(entry.getKey(),i)));
             }
             int ncolumns = entry.getValue().getSize();
             for(int i = 0; i < ncolumns; i++){