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{
"test_samples profile": {
"content": [
7,
{
"CREATE_ANNOTATED_TABLES": {
"r-base": "4.3.3",
"r-ggplot2": null,
"r-dplyr": "1.1.4",
"r-readr": "2.1.5"
},
"CREATE_GENE_HEATMAP": {
"r-base": "4.2.3",
"r-dplyr": "1.1.4",
"r-ggplot2": "3.4.4",
"r-rlang": "1.1.1",
"bioconductor-ComplexHeatmap": "2.14.0",
"r-circlize": "0.4.15",
"r-yaml": "2.3.8",
"r-fs": "1.6.4"
},
"NACHO_NORMALIZE": {
"r-base": "4.3.3",
"r-nacho": "2.0.6",
"r-dplyr": "1.1.4",
"r-ggplot2": "3.4.4",
"r-tidyr": "1.3.0",
"r-readr": "2.1.5",
"r-fs": "1.6.4",
"r-optparse": "1.7.5"
},
"NACHO_QC": {
"r-base": "4.3.3",
"r-nacho": "2.0.6",
"r-dplyr": "1.1.4",
"r-ggplot2": "3.4.4",
"r-tidyr": "1.3.0",
"r-readr": "2.1.5",
"r-fs": "1.6.4",
"r-optparse": "1.7.5"
},
"Workflow": {
"nf-core/nanostring": "v1.4.0dev"
}
},
[
"QC",
"QC/NACHO",
"QC/NACHO/NanoQC.html",
"QC/NACHO/NanoQC_with_outliers.html",
"QC/NACHO/hk_detected_mqc.txt",
"QC/NACHO/normalized_qc_mqc.txt",
"QC/NACHO/png",
"QC/NACHO/png/AVG_vs_BD_mqc.png",
"QC/NACHO/png/AVG_vs_MED_mqc.png",
"QC/NACHO/png/BD_mqc.png",
"QC/NACHO/png/FOV_mqc.png",
"QC/NACHO/png/HKF_mqc.png",
"QC/NACHO/png/HK_mqc.png",
"QC/NACHO/png/LOD_mqc.png",
"QC/NACHO/png/Neg_mqc.png",
"QC/NACHO/png/PCA1_vs_PCA2_mqc.png",
"QC/NACHO/png/PCA_mqc.png",
"QC/NACHO/png/PCAi_mqc.png",
"QC/NACHO/png/POSF_vs_NEGF_mqc.png",
"QC/NACHO/png/Pos_mqc.png",
"QC/NACHO/png/Pos_vs_neg_mqc.png",
"QC/NACHO/png/Posctrl_linearity_mqc.png",
"QC/NACHO/png/plot_normf_mqc.png",
"annotated_tables",
"annotated_tables/counts_Norm_GEX_ENDO.tsv",
"annotated_tables/counts_Norm_GEX_HK.tsv",
"annotated_tables/counts_wo_HKnorm_Norm_GEX_ENDO.tsv",
"annotated_tables/counts_wo_HKnorm_Norm_GEX_HK.tsv",
"gene_heatmaps",
"gene_heatmaps/gene_heatmap_mqc.png",
"gene_heatmaps/wo_HKnorm_gene_heatmap_mqc.png",
"multiqc",
"multiqc/multiqc_data",
"multiqc/multiqc_data/multiqc.log",
"multiqc/multiqc_data/multiqc_No_HK_Norm_GEX_ENDO.txt",
"multiqc/multiqc_data/multiqc_No_HK_Norm_GEX_HK.txt",
"multiqc/multiqc_data/multiqc_Norm_GEX_ENDO.txt",
"multiqc/multiqc_data/multiqc_Norm_GEX_HK.txt",
"multiqc/multiqc_data/multiqc_citations.txt",
"multiqc/multiqc_data/multiqc_data.json",
"multiqc/multiqc_data/multiqc_normalized_qc.txt",
"multiqc/multiqc_data/multiqc_software_versions.txt",
"multiqc/multiqc_data/multiqc_sources.txt",
"multiqc/multiqc_plots",
"multiqc/multiqc_plots/pdf",
"multiqc/multiqc_plots/pdf/No_HK_Norm_GEX_ENDO.pdf",
"multiqc/multiqc_plots/pdf/No_HK_Norm_GEX_HK.pdf",
"multiqc/multiqc_plots/pdf/Norm_GEX_ENDO.pdf",
"multiqc/multiqc_plots/pdf/Norm_GEX_HK.pdf",
"multiqc/multiqc_plots/pdf/normalized_qc.pdf",
"multiqc/multiqc_plots/png",
"multiqc/multiqc_plots/png/No_HK_Norm_GEX_ENDO.png",
"multiqc/multiqc_plots/png/No_HK_Norm_GEX_HK.png",
"multiqc/multiqc_plots/png/Norm_GEX_ENDO.png",
"multiqc/multiqc_plots/png/Norm_GEX_HK.png",
"multiqc/multiqc_plots/png/normalized_qc.png",
"multiqc/multiqc_plots/svg",
"multiqc/multiqc_plots/svg/No_HK_Norm_GEX_ENDO.svg",
"multiqc/multiqc_plots/svg/No_HK_Norm_GEX_HK.svg",
"multiqc/multiqc_plots/svg/Norm_GEX_ENDO.svg",
"multiqc/multiqc_plots/svg/Norm_GEX_HK.svg",
"multiqc/multiqc_plots/svg/normalized_qc.svg",
"multiqc/multiqc_report.html",
"normalized_counts",
"normalized_counts/normalized_counts.tsv",
"normalized_counts/normalized_counts_wo_HKnorm.tsv",
"pipeline_info",
"pipeline_info/nf_core_nanostring_software_mqc_versions.yml"
],
[
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"normalized_qc_mqc.txt:md5,9a0b015a28094a17331b12b08898da8e",
"AVG_vs_BD_mqc.png:md5,06ba42cbbbbbfebd04cdcc1e609f5945",
"AVG_vs_MED_mqc.png:md5,783d2149574bd725e595e1fadeb84927",
"HKF_mqc.png:md5,a21a91e53904e74a81da92eff0260816",
"PCA1_vs_PCA2_mqc.png:md5,a07d944ed0ed85f814143eebcf8ae507",
"PCA_mqc.png:md5,8e4456b730ab72f0dcd5ed1895660df8",
"PCAi_mqc.png:md5,2338d5fe0e447fc74d4969725546c136",
"POSF_vs_NEGF_mqc.png:md5,0e1b5105e68a6e0c51471afce218abdb",
"plot_normf_mqc.png:md5,6ffd3c11f8f5ddfbd3715e1780b10b01",
"multiqc_No_HK_Norm_GEX_ENDO.txt:md5,ebd78401fb548c820ee7e678d2d2aec4",
"multiqc_No_HK_Norm_GEX_HK.txt:md5,0e65e55682d5a7e3879f62de630ab2aa",
"multiqc_Norm_GEX_ENDO.txt:md5,11388cd9088a4f902a6b8fe499f0c379",
"multiqc_Norm_GEX_HK.txt:md5,784a91d6ada77b737f52233734b67afb",
"multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f",
"multiqc_normalized_qc.txt:md5,44a0350c527fe8735fc6b419536a78f5",
"multiqc_sources.txt:md5,d2a044df39ce3c6abe5cdc2d67473490"
]
],
"meta": {
"nf-test": "0.9.3",
"nextflow": "25.04.2"
},
"timestamp": "2026-01-05T19:56:33.487873526"
}
}