remove tkinter

Author: JosephBrunet

src/cardiotensor/orientation/orientation_computation_functions.py

@@ -8,14 +8,6 @@
 import tifffile
 from scipy.interpolate import CubicSpline
 
-# try:
-#     import sys
-#     from PyQt5.QtWidgets import QApplication
-#     app = QApplication.instance()
-#     if app is None:
-#         app = QApplication(sys.argv)
-# except:
-#     pass
 from structure_tensor.multiprocessing import parallel_structure_tensor_analysis
 from tqdm import tqdm
 
@@ -446,6 +438,7 @@ def plot_images(
         None
     """
 
+
     # Default colormaps
     if colormap_angle is None:
         colormap_angle = helix_angle_cmap

src/cardiotensor/scripts/compute_orientation.py

@@ -2,16 +2,13 @@
 import os
 import sys
 import time
-from tkinter import Tk
-from tkinter.filedialog import askopenfilename
 
 from cardiotensor.orientation.orientation_computation_pipeline import (
     compute_orientation,
 )
 from cardiotensor.utils.DataReader import DataReader
 from cardiotensor.utils.utils import read_conf_file
 
-
 def script() -> None:
     """
     Main entry point for the orientation computation pipeline.
@@ -48,30 +45,11 @@ def script() -> None:
         help="Process slices in reverse order starting from the end.",
     )
 
-    # --- Interactive Mode ---
-    if len(sys.argv) < 2:
-        parser.print_help()
-        print("\nNo configuration file provided. Launching interactive mode...")
-        Tk().withdraw()
-        conf_file_path: str = askopenfilename(
-            initialdir=f"{os.getcwd()}/param_files",
-            title="Select a configuration file",
-            filetypes=[
-                ("Config files", "*.conf *.json *.yaml *.yml"),
-                ("All files", "*.*"),
-            ],
-        )
-        if not conf_file_path:
-            sys.exit("❌ No file selected! Exiting.")
-        start_index: int = 0
-        end_index: int | None = None
-        reverse: bool = False
-    else:
-        args = parser.parse_args()
-        conf_file_path = args.conf_file_path
-        start_index = args.start_index
-        end_index = args.end_index
-        reverse = args.reverse
+    args = parser.parse_args()
+    conf_file_path = args.conf_file_path
+    start_index = args.start_index
+    end_index = args.end_index
+    reverse = args.reverse
 
     # --- Read configuration ---
     try:

src/cardiotensor/scripts/slurm_launcher.py

@@ -5,8 +5,6 @@
 import argparse
 import os
 import sys
-from tkinter import Tk  # from tkinter import Tk for Python 3.x
-from tkinter.filedialog import askopenfilename
 
 from cardiotensor.launcher.slurm_launcher import slurm_launcher
 
@@ -16,25 +14,16 @@ def script() -> None:
     Main script to process 3D data. Reads configuration files, launches processing tasks,
     and logs processing time.
     """
-    if len(sys.argv) < 2:
-        # If no argument is passed, show file dialog to select a configuration file
-        Tk().withdraw()
-        conf_file_path: str = askopenfilename(
-            initialdir=f"{os.getcwd()}/param_files", title="Select file"
-        )  # Show an "Open" dialog box and return the path to the selected file
-        if not conf_file_path:
-            sys.exit("No file selected!")
-
-    else:
-        # Parse the configuration file path from command-line arguments
-        parser = argparse.ArgumentParser(
-            description="Process 3D data using the specified configuration file."
-        )
-        parser.add_argument(
-            "conf_file_path", type=str, help="Path to the input configuration file."
-        )
-        args = parser.parse_args()
-        conf_file_path = args.conf_file_path
+
+    # Parse the configuration file path from command-line arguments
+    parser = argparse.ArgumentParser(
+        description="Process 3D data using the specified configuration file."
+    )
+    parser.add_argument(
+        "conf_file_path", type=str, help="Path to the input configuration file."
+    )
+    args = parser.parse_args()
+    conf_file_path = args.conf_file_path
 
     # Launch processing using slurm_launcher
     slurm_launcher(conf_file_path)