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cff-version: 1.2.0
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message: "If you use this software, please cite it using the metadata below."
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title: "Cardiotensor: A Python Library for Orientation Analysis and Tractography in 3D Cardiac Imaging"
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type: software
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authors:
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- family-names: "Brunet"
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given-names: "Joseph"
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orcid: "https://orcid.org/0000-0002-8424-9510"
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affiliation: "University College London; European Synchrotron Radiation Facility"
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- family-names: "Chestnutt"
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given-names: "Lisa"
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orcid: "https://orcid.org/0009-0008-0783-7299"
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- family-names: "Chourrout"
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given-names: "Matthieu"
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orcid: "https://orcid.org/0000-0002-2282-6976"
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- family-names: "Dejea"
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given-names: "Hector"
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orcid: "https://orcid.org/0000-0003-2584-9812"
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- family-names: "Sabarigirivasan"
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given-names: "Vaishnavi"
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orcid: "https://orcid.org/0000-0003-2550-6262"
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- family-names: "Lee"
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given-names: "Peter D."
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orcid: "https://orcid.org/0000-0002-3898-8881"
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- family-names: "Cook"
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given-names: "Andrew C."
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orcid: "https://orcid.org/0000-0001-5079-7546"
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keywords:
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- Python
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- cardiac imaging
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- structure tensor
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- orientation analysis
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- tractography
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- fiber architecture
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- synchrotron tomography
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license: "MIT"
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repository-code: "https://github.com/JosephBrunet/cardiotensor"
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url: "https://github.com/JosephBrunet/cardiotensor"
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abstract: >
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Cardiotensor is an open-source Python package designed to quantify 3D cardiomyocyte
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orientation in whole- or partial-heart imaging datasets. It provides scalable
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implementations of structure tensor analysis and tractography for teravoxel-scale
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datasets, enabling extraction of directional metrics such as helical angle (HA),
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intrusion angle (IA), and fractional anisotropy (FA).
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version: "1.1.8"
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date-released: 2026-04-06

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