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Use pm.Data instead of deprecated pm.ConstantData
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lines changed

3 files changed

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bletl/growth.py

Lines changed: 5 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -352,10 +352,10 @@ def fit_mu_t(
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"segment": numpy.arange(TS),
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}
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with pm.Model(coords=coords) as pmodel:
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pm.ConstantData("known_switchpoints", t_switchpoints_known)
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pm.ConstantData("t_data", t_data, dims="timepoint")
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pm.ConstantData("t_segments", t_segments, dims="segment")
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dt = pm.ConstantData("dt", numpy.diff(t_data), dims="segment")
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pm.Data("known_switchpoints", t_switchpoints_known)
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pm.Data("t_data", t_data, dims="timepoint")
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pm.Data("t_segments", t_segments, dims="segment")
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dt = pm.Data("dt", numpy.diff(t_data), dims="segment")
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# The init dist for the random walk is where each segment starts.
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# Here we center it on the user-provided mu_prior,
@@ -428,7 +428,7 @@ def fit_mu_t(
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)
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calibration_model.loglikelihood(
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x=Xt,
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y=pm.ConstantData("backscatter", y, dims=("timepoint",)),
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y=pm.Data("backscatter", y, dims=("timepoint",)),
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name=f"{replicate_id}_{calibration_model.dependent_key}",
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dims="timepoint",
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)

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