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graeme-a-stewartgraeme-a-stewart
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Add compressed file reading support and fix examples (new Pluto example) (#64)
* Add support for reading gzipped files in Utils.jl As storing uncompressed HepMC3 ASCII files in git is inefficient (even if git compresses them, they clutter the package) add the feature to automatically read data from gzip compressed files (.gz extension). The allows tests and examples to be written that can use gzipped data files without complications. * Remove lzma compressed data file * Fix examples and an interactive Pluto visualisation Fix examples to use the compressed data file helper. Add an example using Pluto that allows dynamic selection of the reconstructed event and the algorithmic parameters. * Exempt Pluto nobebook from formatting
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‎Project.toml

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@@ -5,6 +5,7 @@ version = "0.3.0"
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[deps]
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Accessors = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697"
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CodecZlib = "944b1d66-785c-5afd-91f1-9de20f533193"
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EnumX = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
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JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
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Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
@@ -20,6 +21,7 @@ JetVisualisation = "Makie"
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[compat]
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Accessors = "0.1.36"
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CodecZlib = "0.7.4"
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EnumX = "1.0.4"
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JSON = "0.21.4"
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LoopVectorization = "0.12.170"

‎examples/Project.toml

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@@ -3,10 +3,12 @@ ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63"
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CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
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Colors = "5ae59095-9a9b-59fe-a467-6f913c188581"
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FlameGraphs = "08572546-2f56-4bcf-ba4e-bab62c3a3f89"
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GLMakie = "e9467ef8-e4e7-5192-8a1a-b1aee30e663a"
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JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
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JetReconstruction = "44e8cb2c-dfab-4825-9c70-d4808a591196"
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LorentzVectorHEP = "f612022c-142a-473f-8cfd-a09cf3793c6c"
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Pluto = "c3e4b0f8-55cb-11ea-2926-15256bba5781"
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PlutoUI = "7f904dfe-b85e-4ff6-b463-dae2292396a8"
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Profile = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79"
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ProfileSVG = "132c30aa-f267-4189-9183-c8a63c7e05e6"
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StatProfilerHTML = "a8a75453-ed82-57c9-9e16-4cd1196ecbf5"
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WGLMakie = "276b4fcb-3e11-5398-bf8b-a0c2d153d008"

‎examples/visualise-jets-pluto.jl

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### A Pluto.jl notebook ###
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# v0.19.42
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# Do not format this code, it's under the control of the Pluto.jl notebook
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#! format: off
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using Markdown
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using InteractiveUtils
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# This Pluto notebook uses @bind for interactivity. When running this notebook outside of Pluto, the following 'mock version' of @bind gives bound variables a default value (instead of an error).
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macro bind(def, element)
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quote
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local iv = try Base.loaded_modules[Base.PkgId(Base.UUID("6e696c72-6542-2067-7265-42206c756150"), "AbstractPlutoDingetjes")].Bonds.initial_value catch; b -> missing; end
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local el = $(esc(element))
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global $(esc(def)) = Core.applicable(Base.get, el) ? Base.get(el) : iv(el)
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el
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end
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end
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# ╔═╡ cf88f2f9-bf19-47e2-ae04-b4476eb26efb
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import Pkg
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# ╔═╡ 24dd666c-49be-4c44-9b9d-d27128c1ffbb
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Pkg.activate(".")
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# ╔═╡ 0a1a8211-507b-4dc0-9060-0d18a5a695a4
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using GLMakie
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# ╔═╡ f7ec7400-bbb2-4f28-9f13-881dea775f41
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using PlutoUI
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# ╔═╡ 32b48d85-40cb-42c8-b3ad-ab613081da38
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using JetReconstruction
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# ╔═╡ dff6a188-2cbe-11ef-32d0-73c4c05efad2
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md"""# Jet Reconstruction Visualisation
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This Pluto script visualises the result of a jet reconstruction process.
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Use the sliders below to change the reconstructed event, the algorithm and the jet radius parameter."""
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# ╔═╡ 0642cc6e-290e-4e01-9882-5c12d7585ead
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# ╔═╡ 4e569f74-570b-4b30-9ea7-9cbc420f50f8
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md"Event number:"
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# ╔═╡ 83030910-8d00-4949-b69e-fa492b61db6b
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@bind event_no PlutoUI.Slider(1:100, show_value=true)
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# ╔═╡ 306f6e66-788c-4a95-a9df-3ac4c37cf776
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md"``k_T`` algorithm power (-1=Anti-``k_T``, 0 = Cambridge/Aachen, 1=Inclusive kT)"
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# ╔═╡ 864d7a31-b634-4edc-b6c4-0835fee53304
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@bind power PlutoUI.Slider(-1:1, show_value=true)
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# ╔═╡ 9f7988a5-041e-4a83-9da9-d48db34cea98
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md"Jet radius parameter"
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# ╔═╡ 187315d4-ac3c-4847-ae00-e7da1b27d63f
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@bind radius PlutoUI.Slider(range(start=0.4, stop=2.0, step=0.1), show_value=true)
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# ╔═╡ 79f24ec1-a63e-4e96-bd67-49661125be66
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input_file = joinpath(dirname(pathof(JetReconstruction)), "..", "test", "data", "events.hepmc3.gz")
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# ╔═╡ 7d7a8b11-19b3-4b83-a0b1-8201b74b588e
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events::Vector{Vector{PseudoJet}} = read_final_state_particles(input_file,
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maxevents = event_no, skipevents = event_no);
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# ╔═╡ 2a899d67-71f3-4fe0-8104-7633a44a06a8
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cs = jet_reconstruct(events[1], p=power, R=radius)
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# ╔═╡ b5fd4e96-d073-4e5f-8de1-41addaa0dc3d
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jetreco_vis = jetsplot(events[1], cs; Module = GLMakie)
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# ╔═╡ 81b14eba-6981-4943-92fe-529c53b0ac35
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display(jetreco_vis);
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# ╔═╡ Cell order:
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# ╟─dff6a188-2cbe-11ef-32d0-73c4c05efad2
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# ╠═0642cc6e-290e-4e01-9882-5c12d7585ead
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# ╠═cf88f2f9-bf19-47e2-ae04-b4476eb26efb
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# ╠═24dd666c-49be-4c44-9b9d-d27128c1ffbb
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# ╠═0a1a8211-507b-4dc0-9060-0d18a5a695a4
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# ╠═f7ec7400-bbb2-4f28-9f13-881dea775f41
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# ╠═32b48d85-40cb-42c8-b3ad-ab613081da38
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# ╟─4e569f74-570b-4b30-9ea7-9cbc420f50f8
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# ╟─83030910-8d00-4949-b69e-fa492b61db6b
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# ╟─306f6e66-788c-4a95-a9df-3ac4c37cf776
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# ╟─864d7a31-b634-4edc-b6c4-0835fee53304
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# ╟─9f7988a5-041e-4a83-9da9-d48db34cea98
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# ╟─187315d4-ac3c-4847-ae00-e7da1b27d63f
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# ╟─79f24ec1-a63e-4e96-bd67-49661125be66
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# ╠═7d7a8b11-19b3-4b83-a0b1-8201b74b588e
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# ╠═2a899d67-71f3-4fe0-8104-7633a44a06a8
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# ╠═b5fd4e96-d073-4e5f-8de1-41addaa0dc3d
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# ╠═81b14eba-6981-4943-92fe-529c53b0ac35

‎examples/visualise-jets.ipynb

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},
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{
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"cell_type": "code",
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"execution_count": 1,
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"using JetReconstruction\n",
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"using WGLMakie"
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"using GLMakie"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 2,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
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"-1"
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]
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},
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"metadata": {},
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"output_type": "display_data"
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}
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],
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"outputs": [],
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"source": [
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"input_file = joinpath(dirname(pathof(JetReconstruction)), \"..\", \"test\", \"data\", \"events.hepmc3\")\n",
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"input_file = joinpath(dirname(pathof(JetReconstruction)), \"..\", \"test\", \"data\", \"events.hepmc3.gz\")\n",
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"event_number = 5\n",
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"power = JetReconstruction.algorithm2power[JetAlgorithm.AntiKt]"
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"power = JetReconstruction.algorithm2power[JetAlgorithm.AntiKt];"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 3,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
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"name": "stderr",
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"output_type": "stream",
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"text": [
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"┌ Info: Total Events: 1\n",
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"└ @ JetReconstruction /Users/graemes/code/JetReconstruction.jl/src/Utils.jl:25\n"
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]
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},
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{
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"data": {
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"text/plain": [
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"1-element Vector{Vector{PseudoJet}}:\n",
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" [Pseudojet(px: 0.10735113569266963 py: 0.2004614564282816 pz: 4.422690640225503 E: 4.430731468492096; pt: 0.22739626612557606 eta: 3.5020136230471057 phi: 1.0791380602175356, m: 0.13957000000001873), Pseudojet(px: 0.0011180093991561963 py: 0.012301879085520844 pz: 22.359575220942624 E: 22.365027980969874; pt: 0.01235257762782233 eta: 4.506078564441087 phi: 1.4801641127937162, m: 0.49367999999995554), Pseudojet(px: -0.33118180618811155 py: -0.24231713636363833 pz: -3.25942622170417 E: 3.2881207494491758; pt: 0.4103644518297046 eta: -2.715069658291437 phi: 3.773261626597981, m: 0.1395699999999775), Pseudojet(px: 0.2845031139591477 py: -0.2609196772690977 pz: 0.5824183002026259 E: 0.7125390944710178; pt: 0.3860325113752232 eta: 1.148884934008853 phi: 5.540999045397645, m: 0.13957000000000067), Pseudojet(px: 0.277302069395142 py: 0.03634561140067778 pz: 39.80187826849783 E: 39.80592231168471; pt: 0.27967381207205877 eta: 4.943811191960002 phi: 0.13032576256213585, m: 0.49367999999988865), Pseudojet(px: 0.5585153132771401 py: -0.3956483216555057 pz: -3.612052304986627 E: 3.6789779271494787; pt: 0.6844537600115003 eta: -2.345409125258054 phi: 5.666848658975102, m: 0.13956999999996506), Pseudojet(px: 0.18720823164796177 py: -0.1318330234187746 pz: -0.01476649422315373 E: 0.2685604258116496; pt: 0.22896914215782896 eta: -0.055039390302584666 phi: 5.669642585890234, m: 0.13957000000000006), Pseudojet(px: -0.284009089213228 py: 0.19114033359969312 pz: 0.5990537728620824 E: 0.7039467292094088; pt: 0.34233870637765934 eta: 1.259742297825951 phi: 2.549212870154946, m: 0.13957000000000028), Pseudojet(px: -0.1198632609880622 py: -1.01567218528733 pz: 12.315390709550222 E: 12.358571329368008; pt: 1.0227204844438351 eta: 3.1740560094308856 phi: 4.59491858779022, m: 0.1395699999999233), Pseudojet(px: 0.14193817088911215 py: -0.10210725343936139 pz: -491.6296473818766 E: 491.63057629580845; pt: 0.17484946542748359 eta: -6.936184139290346 phi: 5.659571757044644, m: 0.9395699999616959) … Pseudojet(px: -0.22734940597450876 py: -0.19391176346017772 pz: 1.2342343780389635 E: 1.269891343516611; pt: 0.29881352781491993 eta: 2.125875213203082 phi: 3.8477817997568358, m: -4.012260442327338e-8), Pseudojet(px: -0.523471846359122 py: -0.48320925068178905 pz: 2.179296432537861 E: 2.2927814755766254; pt: 0.7124001360717755 eta: 1.836968693576574 phi: 3.887016739844139, m: -6.664001874625056e-8), Pseudojet(px: -0.2312767181096859 py: -0.21992677138349426 pz: 0.4294329015812787 E: 0.5350414208930659; pt: 0.31914997275693896 eta: 1.1059220830216552 phi: 3.9018412914459106, m: -1.235539015514925e-8), Pseudojet(px: -0.11069390032673052 py: -0.08757514264029723 pz: 0.3836884534292784 E: 0.4088268269976469; pt: 0.14114724644148235 eta: 1.7254081403827335 phi: 3.8109120397691947, m: -1.3301947021005397e-8), Pseudojet(px: -0.10329088004039041 py: -0.06428883857518583 pz: 0.8355555651306337 E: 0.8558241337948111; pt: 0.12166371959160473 eta: 2.212114260143481 phi: 3.6983242717426164, m: 0.13957000000000566), Pseudojet(px: -0.47893890239446585 py: -0.7722751051190008 pz: 7.740016906120406 E: 7.794429600820265; pt: 0.9087306037618517 eta: 2.8271088536617697 phi: 4.157273223909725, m: 0.13957000000024747), Pseudojet(px: 0.26463547776785407 py: 0.1378250615977995 pz: -0.33116508213450935 E: 0.44575553313785565; pt: 0.29837507217905723 eta: -0.9569868503353292 phi: 0.480157443201187, m: -3.725290298461914e-9), Pseudojet(px: 0.12023014344988193 py: -0.02895697531429787 pz: -0.14561313580629956 E: 0.19104182561071778; pt: 0.12366807920127183 eta: -1.0014573565077023 phi: 6.046840349964005, m: 4.562530187486071e-9), Pseudojet(px: 0.23193210651528592 py: -0.20537892641762634 pz: -0.18706512331287167 E: 0.3618927545684421; pt: 0.3097951023645705 eta: -0.5721105945608865 phi: 5.55843189731101, m: 9.125060374972142e-9), Pseudojet(px: 0.13205569774138806 py: -0.1001219907287217 pz: -0.23680434557793556 E: 0.2890318640185567; pt: 0.16572000583347526 eta: -1.1546901232363953 phi: 5.634469512021886, m: 5.890201144234053e-9)]"
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]
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},
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"metadata": {},
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"output_type": "display_data"
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}
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],
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"outputs": [],
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"source": [
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"# We read only one event\n",
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"events::Vector{Vector{PseudoJet}} = read_final_state_particles(input_file, maxevents = event_number, skipevents = event_number)"
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"events::Vector{Vector{PseudoJet}} = read_final_state_particles(input_file, maxevents = event_number, \n",
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" skipevents = event_number);"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 4,
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"execution_count": null,
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
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"ClusterSequence(JetReconstruction.JetAlgorithm.AntiKt, JetReconstruction.RecoStrategy.N2Tiled, PseudoJet[Pseudojet(px: 0.10735113569266963 py: 0.2004614564282816 pz: 4.422690640225503 E: 4.430731468492096; pt: 0.22739626612557606 eta: 3.5020136230471057 phi: 1.0791380602175356, m: 0.13957000000001873), Pseudojet(px: 0.0011180093991561963 py: 0.012301879085520844 pz: 22.359575220942624 E: 22.365027980969874; pt: 0.01235257762782233 eta: 4.506078564441087 phi: 1.4801641127937162, m: 0.49367999999995554), Pseudojet(px: -0.33118180618811155 py: -0.24231713636363833 pz: -3.25942622170417 E: 3.2881207494491758; pt: 0.4103644518297046 eta: -2.715069658291437 phi: 3.773261626597981, m: 0.1395699999999775), Pseudojet(px: 0.2845031139591477 py: -0.2609196772690977 pz: 0.5824183002026259 E: 0.7125390944710178; pt: 0.3860325113752232 eta: 1.148884934008853 phi: 5.540999045397645, m: 0.13957000000000067), Pseudojet(px: 0.277302069395142 py: 0.03634561140067778 pz: 39.80187826849783 E: 39.80592231168471; pt: 0.27967381207205877 eta: 4.943811191960002 phi: 0.13032576256213585, m: 0.49367999999988865), Pseudojet(px: 0.5585153132771401 py: -0.3956483216555057 pz: -3.612052304986627 E: 3.6789779271494787; pt: 0.6844537600115003 eta: -2.345409125258054 phi: 5.666848658975102, m: 0.13956999999996506), Pseudojet(px: 0.18720823164796177 py: -0.1318330234187746 pz: -0.01476649422315373 E: 0.2685604258116496; pt: 0.22896914215782896 eta: -0.055039390302584666 phi: 5.669642585890234, m: 0.13957000000000006), Pseudojet(px: -0.284009089213228 py: 0.19114033359969312 pz: 0.5990537728620824 E: 0.7039467292094088; pt: 0.34233870637765934 eta: 1.259742297825951 phi: 2.549212870154946, m: 0.13957000000000028), Pseudojet(px: -0.1198632609880622 py: -1.01567218528733 pz: 12.315390709550222 E: 12.358571329368008; pt: 1.0227204844438351 eta: 3.1740560094308856 phi: 4.59491858779022, m: 0.1395699999999233), Pseudojet(px: 0.14193817088911215 py: -0.10210725343936139 pz: -491.6296473818766 E: 491.63057629580845; pt: 0.17484946542748359 eta: -6.936184139290346 phi: 5.659571757044644, m: 0.9395699999616959) … Pseudojet(px: -0.39835711999954054 py: 0.2670425498120344 pz: 0.7823069850508971 E: 0.9340296824136827; pt: 0.4795832758389738 eta: 1.2129464793726437 phi: 2.551037707350037, m: 0.17437634675018016), Pseudojet(px: -0.951550846981664 py: -0.9977730565509817 pz: 2.4230718853428095 E: 3.73223181209067; pt: 1.3787675970846611 eta: 0.7739642228927174 phi: 3.9506982929567993, m: 2.481386074530168), Pseudojet(px: 0.575045650586158 py: -0.5793693320717683 pz: 119.64892585365241 E: 119.65220155609016; pt: 0.8163003878495616 eta: 5.5994728271350915 phi: 5.494041817072272, m: 0.3428308084295518), Pseudojet(px: 0.7430438203838197 py: -0.628041726281588 pz: 141.8604114139369 E: 141.8648142562351; pt: 0.9729082839411632 eta: 5.536755612159961 phi: 5.581467943888408, m: 0.5501335253218786), Pseudojet(px: -0.7419306814989711 py: -1.2366670329604335 pz: -624.3010720899828 E: 624.3038227364076; pt: 1.4421534199108947 eta: -6.512850727112166 phi: 4.17201082701939, m: 1.163900383803333), Pseudojet(px: 0.8187724552223374 py: -1.067476764067555 pz: 231.86864600370112 E: 231.87426160333024; pt: 1.3453233720020452 eta: 5.66076861307267 phi: 5.366692093104101, m: 0.8912348314063477), Pseudojet(px: -0.744694588399963 py: -0.009592334481453038 pz: 208.62889484542603 E: 208.63058856570524; pt: 0.7447563647750817 eta: 6.207268055736434 phi: 3.154472838529462, m: 0.38994718343853185), Pseudojet(px: -0.1192134634148563 py: -0.3533286513298661 pz: 28.166510818816608 E: 28.169333465655836; pt: 0.37289809024711745 eta: 4.950705618562694 phi: 4.386981945468061, m: 0.14129121379207538), Pseudojet(px: 0.23303548004166347 py: -0.13392810235789748 pz: 912.9974388192057 E: 912.9976433113742; pt: 0.26877922456811276 eta: 8.002430623603196 phi: 5.761568088926931, m: 0.5487799398343952), Pseudojet(px: -0.08919052127372945 py: -0.11399069359282013 pz: -13.401707836816184 E: 13.4025408354216; pt: 0.1447370972171675 eta: -5.189519498733623 phi: 4.04844938780284, m: 0.0371358916999187)], 627, JetReconstruction.HistoryElement[JetReconstruction.HistoryElement(-2, -2, 920, 1, 0.0, 0.0), JetReconstruction.HistoryElement(-2, -2, 875, 2, 0.0, 0.0), JetReconstruction.HistoryElement(-2, -2, 990, 3, 0.0, 0.0), JetReconstruction.HistoryElement(-2, -2, 665, 4, 0.0, 0.0), JetReconstruction.HistoryElement(-2, -2, 1247, 5, 0.0, 0.0), JetReconstruction.HistoryElement(-2, -2, 1059, 6, 0.0, 0.0), JetReconstruction.HistoryElement(-2, -2, 1045, 7, 0.0, 0.0), JetReconstruction.HistoryElement(-2, -2, 1224, 8, 0.0, 0.0), JetReconstruction.HistoryElement(-2, -2, 948, 9, 0.0, 0.0), JetReconstruction.HistoryElement(-2, -2, 1216, 10, 0.0, 0.0) … JetReconstruction.HistoryElement(248, -1, -3, -3, 9.280205444134888, 9.280205444134888), JetReconstruction.HistoryElement(270, -1, -3, -3, 10.433687082239864, 10.433687082239864), JetReconstruction.HistoryElement(5, -1, -3, -3, 12.784872340278474, 12.784872340278474), JetReconstruction.HistoryElement(1243, -1, -3, -3, 13.842311134655677, 13.842311134655677), JetReconstruction.HistoryElement(117, -1, -3, -3, 23.637588808292218, 23.637588808292218), JetReconstruction.HistoryElement(67, 408, 1251, 1203, 30.63667250108433, 30.63667250108433), JetReconstruction.HistoryElement(1250, -1, -3, -3, 47.73536891403872, 47.73536891403872), JetReconstruction.HistoryElement(11, -1, -3, -3, 65.27369292060092, 65.27369292060092), JetReconstruction.HistoryElement(494, -1, -3, -3, 396.63695275112633, 396.63695275112633), JetReconstruction.HistoryElement(429, -1, -3, -3, 29349.05857739363, 29349.05857739363)], 13000.000000397144)"
81-
]
82-
},
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"metadata": {},
84-
"output_type": "display_data"
85-
}
86-
],
48+
"outputs": [],
8749
"source": [
88-
"cs = jet_reconstruct(events[1], R = 1.0, p = power)"
50+
"cs = jet_reconstruct(events[1], R = 1.0, p = power);"
8951
]
9052
},
9153
{
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"cell_type": "code",
93-
"execution_count": 5,
55+
"execution_count": null,
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/html": [
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"<div class=\"bonito-fragment\" id=\"560b6b52-3454-4de9-a7d0-e3eb34f27d29\" data-jscall-id=\"root\">\n",
100-
" <div>\n",
101-
" <script src=\"http://localhost:9384/assets/57a24233568ab04a755c3e4d5bc6580eb4504a70-Bonito.bundled.js\" type=\"module\"></script>\n",
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" <style></style>\n",
103-
" <div></div>\n",
104-
" </div>\n",
105-
" <div>\n",
106-
" <script type=\"module\"> Bonito.lock_loading(() => {\n",
107-
" return Bonito.fetch_binary('http://localhost:9384/assets/aa745754d65135ffedf6b982959baeee68633bca-4487588625566090765.bin').then(msgs=> Bonito.init_session('560b6b52-3454-4de9-a7d0-e3eb34f27d29', msgs, 'root'));\n",
108-
" })\n",
109-
"</script>\n",
110-
" <script type=\"module\"> import('http://localhost:9384/assets/fe1a4bb6992a553d47533fa13ef2db822ae1d57f-Websocket.bundled.js').then(WS => {\n",
111-
" WS.setup_connection({proxy_url: 'http://localhost:9384', session_id: '560b6b52-3454-4de9-a7d0-e3eb34f27d29', compression_enabled: false})\n",
112-
" })\n",
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"</script>\n",
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" <div style=\"width: 100%; height: 100%\" data-jscall-id=\"1\">\n",
115-
" <canvas style=\"display: block\" data-jscall-id=\"2\" tabindex=\"0\"></canvas>\n",
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" </div>\n",
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" </div>\n",
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"</div>"
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]
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},
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"metadata": {},
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"output_type": "display_data"
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}
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],
57+
"outputs": [],
12558
"source": [
126-
"jetreco = jetsplot(events[1], cs; Module = WGLMakie)\n",
59+
"jetreco = jetsplot(events[1], cs; Module = GLMakie);\n",
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"display(jetreco);"
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]
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},
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{
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"cell_type": "code",
132-
"execution_count": 6,
65+
"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": []
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}
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],
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"metadata": {
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"kernelspec": {
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"display_name": "Julia 1.10.3",
73+
"display_name": "Julia 1.10.4",
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"language": "julia",
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"name": "julia-1.10"
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},
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"language_info": {
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"file_extension": ".jl",
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"mimetype": "application/julia",
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"name": "julia",
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"version": "1.10.3"
81+
"version": "1.10.4"
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}
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},
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"nbformat": 4,

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