Merge branch 'tcp-drug-filter' into dev

Author: TheCedarPrince

CHANGELOG.md

@@ -6,6 +6,25 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/)
 and this project adheres to [Semantic Versioning](http://semver.org/).
 
 
+## [0.5.0] - February 23rd, 2024
+
+Patch release to add in some new features and fixes 
+
+### Added 
+
+- Added Getters for Drug Exposures
+
+  *  GetDrugExposureStartDate
+
+  *  GetDrugExposureEndDate
+
+- Misc
+
+  * Minor fixes in  GetPatientAgeGroup Function
+  
+- Extensive test suite for new features
+
+
 ## [0.4.0] - December 1st, 2023
 
 Patch release to add in some new features and fixes 

CITATION.cff

@@ -10,7 +10,7 @@ authors:
     given-names: Fareeda
   - family-names: Sanjay
     given-names: Jay
-title: "OMOPCDMCohortCreator 0.4.0"
-version: 0.4.0
+title: "OMOPCDMCohortCreator 0.5.0"
+version: 0.5.0
 doi: 10.5281/zenodo.7052105
-date-released: 2023-12-01
+date-released: 2024-02-23

Project.toml

@@ -1,7 +1,7 @@
 name = "OMOPCDMCohortCreator"
 uuid = "f525a15e-a73f-4eef-870f-f901257eae22"
 authors = ["Jacob Zelko <[email protected]>", "Fareeda Abdelazeez", "Varshini Chinta", "Jay Sanjay <[email protected]>"]
-version = "0.4.0"
+version = "0.5.0"
 
 [deps]
 DBInterface = "a10d1c49-ce27-4219-8d33-6db1a4562965"

docs/Project.toml

@@ -1,4 +1,5 @@
 [deps]
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 DocumenterTools = "35a29f4d-8980-5a13-9543-d66fff28ecb8"
+LiveServer = "16fef848-5104-11e9-1b77-fb7a48bbb589"
 OMOPCDMCohortCreator = "f525a15e-a73f-4eef-870f-f901257eae22"

src/filters.jl

@@ -282,4 +282,31 @@ function StateFilterPersonIDs(states; tab = location, join_tab = person)
 
 end
 
-export VisitFilterPersonIDs, ConditionFilterPersonIDs, RaceFilterPersonIDs, GenderFilterPersonIDs, StateFilterPersonIDs
+"""
+TODO: Update these docstrings
+"""
+function DrugExposureFilterPersonIDs(
+    drug_concept_ids, conn;
+    tab = drug_exposure,
+)
+    df = DBInterface.execute(conn, DrugExposureFilterPersonIDs(drug_concept_ids; tab = tab)) |> DataFrame
+
+    return df 
+
+end
+
+function DrugExposureFilterPersonIDs(
+    drug_concept_ids;
+    tab = drug_exposure,
+)
+    sql =
+        From(tab) |>
+        Where(Fun.in(Get.drug_concept_id, drug_concept_ids...)) |>
+        Group(Get.person_id) |>
+        q -> render(q, dialect = dialect)
+
+        return String(sql)
+
+end
+
+export VisitFilterPersonIDs, ConditionFilterPersonIDs, RaceFilterPersonIDs, GenderFilterPersonIDs, StateFilterPersonIDs