get-NRZ-data #776

	name: "get-NRZ-data"
	on:
	workflow_dispatch:
	schedule:
	- cron: "0 8,16 * * 1,5"

	jobs:
	get-NRZ-data:
	runs-on: macos-13
	steps:
	- uses: actions/checkout@main

	- name: Setup R
	uses: r-lib/actions/setup-r@v2
	with:
	r-version: 4.1.2

	- name: Install XQuartz for imager
	run: brew install xquartz --cask

	- name: Cache R packages
	uses: actions/cache@v4
	with:
	path: ${{ env.R_LIBS_USER }}
	key: r-${{ hashFiles('DESCRIPTION') }}

	- name: Get weekly NRZ data
	run: \|
	cd ./code
	Rscript ./get_nrz_data.R

	- name: Commit files
	env:
	AUTH: ${{ secrets.GITHUB_TOKEN }}
	run: \|
	git config --local user.email "action@github.com"
	git config --local user.name "GitHub Action"
	git remote rm origin
	git remote add origin https://${AUTH}@github.com/KITmetricslab/RESPINOW-Data.git > /dev/null 2>&1
	git pull origin main
	git add --all
	git commit --allow-empty -m "Weekly NRZ update"

	- name: Push changes
	run: \|
	git push --quiet --set-upstream origin HEAD:main
	echo "pushed to github"

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