Pin torch package (#181)

http://b/224540778

Author: Philmod

bioconductor_installs.R

@@ -10,6 +10,7 @@ if (!requireNamespace("BiocManager", quietly = TRUE))
 
 BiocManager::install(update=FALSE, ask=FALSE)
 BiocManager::install("BiocGenerics", update=FALSE, ask=FALSE)
+install_version("locfit", version = "1.5.9.4", ask=FALSE)
 BiocManager::install("EBImage", update=FALSE, ask=FALSE)
 BiocManager::install("rhdf5", update=FALSE, ask=FALSE)
 BiocManager::install("limma", update=FALSE, ask=FALSE)

gpu.Dockerfile

@@ -71,7 +71,8 @@ RUN CPATH=/usr/local/cuda/targets/x86_64-linux/include install2.r --error --ncpu
 
 # Torch: install the full package upfront otherwise it will be installed on loading the package which doesn't work for kernels
 # without internet (competitions for example). It will detect CUDA and install the proper version.
-RUN R -e 'install.packages("torch")'
+# TODO(b/224540778) Unpin Torch.
+RUN R -e 'library(devtools); install_version("torch", version = "0.6.0", ask=FALSE)'
 RUN R -e 'library(torch); install_torch(reinstall = TRUE)'
 
 CMD ["R"]

package_installs.R

@@ -52,6 +52,8 @@ install.packages("imager")
 
 # Torch: install the full package upfront otherwise it will be installed on loading the package which doesn't work for kernels
 # without internet (competitions for example).
+# TODO(b/224540778) Unpin Torch.
+install_version("torch", version = "0.6.0", ask=FALSE)
 library(torch)
 install_torch(reinstall = TRUE)