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RachelKarchinclaude
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Fix CRAFT acronym expansion
CRAFT stands for Cancer Repertoire Anomaly Finding Transformer, not the placeholder "Conditional Recombination-Aware Framework for T cells" that I'd put in the README rewrite. Updated in: - README.md (top-of-file title) - pyproject.toml (project description) - craft/__init__.py (module docstring) Also adds *.egg-info/ to .gitignore so editable installs don't surface build artifacts as untracked files. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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.gitignore

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__pycache__/
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*.pyc
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*.egg-info/
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.ipynb_checkpoints/
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*.html
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*.pth

README.md

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# CRAFT: Conditional Recombination-Aware Framework for T cells
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# CRAFT: Cancer Repertoire Anomaly Finding Transformer
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[![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](LICENSE)
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[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.19889461.svg)](https://doi.org/10.5281/zenodo.19889461)

craft/__init__.py

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"""CRAFT: Conditional Recombination-Aware Framework for T cells.
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"""CRAFT: Cancer Repertoire Anomaly Finding Transformer.
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A conditional sequence-to-sequence transformer for TCR-beta repertoires.
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See README.md for usage and the manuscript citation.

pyproject.toml

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[project]
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name = "craft-tcr"
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version = "0.1.0"
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description = "CRAFT: Conditional Recombination-Aware Framework for T cells — a conditional sequence-to-sequence transformer for TCR-beta repertoires."
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description = "CRAFT: Cancer Repertoire Anomaly Finding Transformer — a conditional sequence-to-sequence transformer for TCR-beta repertoires."
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readme = "README.md"
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license = { file = "LICENSE" }
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authors = [

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