Periodic tests #178
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Periodic tests | |
| on: | |
| schedule: | |
| # every day at 1:30 AM UTC | |
| - cron: "30 1 * * *" | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }} | |
| cancel-in-progress: true | |
| jobs: | |
| check-manifest: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v5 | |
| - name: Setup Python 3.12 | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.12" | |
| - name: Run check-manifest | |
| uses: pre-commit/[email protected] | |
| with: | |
| extra_args: check-manifest --hook-stage manual | |
| pre-commit: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v5 | |
| - name: Setup Python 3.12 | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.12" | |
| - name: Run pre-commit | |
| uses: pre-commit/[email protected] | |
| with: | |
| extra_args: --all-files | |
| run-notebook-examples: | |
| runs-on: macos-14 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v5 | |
| - name: Install latest version of bash | |
| run: | | |
| brew install bash | |
| /opt/homebrew/bin/bash --version | |
| - name: Setup Python 3.12 | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.12" | |
| - name: Use numba cache to set env variables but not restore cache | |
| uses: ./.github/actions/numba_cache | |
| with: | |
| cache_name: "run-notebook-examples" | |
| runner_os: ${{ runner.os }} | |
| python_version: "3.12" | |
| restore_cache: "false" | |
| - name: Install dependencies | |
| uses: nick-fields/retry@v3 | |
| with: | |
| timeout_minutes: 30 | |
| max_attempts: 3 | |
| command: python -m pip install .[all_extras,binder,dev] | |
| - name: Show dependencies | |
| run: python -m pip list | |
| - name: Run example notebooks | |
| run: .github/utilities/run_examples.sh false | |
| shell: bash | |
| - name: Save new cache | |
| uses: actions/cache/save@v4 | |
| with: | |
| path: ${{ github.workspace }}/.numba_cache | |
| # Save cache with the current date (ENV set in numba_cache action) | |
| key: numba-run-notebook-examples-${{ runner.os }}-3.12-${{ env.CURRENT_DATE }} | |
| test-core-imports: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v5 | |
| - name: Setup Python 3.12 | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.12" | |
| - name: Install aeon and dependencies | |
| uses: nick-fields/retry@v3 | |
| with: | |
| timeout_minutes: 30 | |
| max_attempts: 3 | |
| command: python -m pip install . | |
| - name: Show dependencies | |
| run: python -m pip list | |
| - name: Run import test | |
| run: python aeon/testing/tests/test_core_imports.py | |
| test-no-soft-deps: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v5 | |
| - name: Setup Python 3.12 | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.12" | |
| - name: Use numba cache to set env variables but not restore cache | |
| uses: ./.github/actions/numba_cache | |
| with: | |
| cache_name: "test-no-soft-deps" | |
| runner_os: ${{ runner.os }} | |
| python_version: "3.12" | |
| restore_cache: "false" | |
| - name: Install aeon and dependencies | |
| uses: nick-fields/retry@v3 | |
| with: | |
| timeout_minutes: 30 | |
| max_attempts: 3 | |
| command: python -m pip install .[dev] | |
| - name: Show dependencies | |
| run: python -m pip list | |
| - name: Run tests | |
| run: python -m pytest -n logical | |
| - name: Save new cache | |
| uses: actions/cache/save@v4 | |
| with: | |
| path: ${{ github.workspace }}/.numba_cache | |
| # Save cache with the current date (ENV set in numba_cache action) | |
| key: numba-test-no-soft-deps-${{ runner.os }}-3.12-${{ env.CURRENT_DATE }} | |
| pytest: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-24.04, macOS-14, windows-2022 ] | |
| python-version: [ "3.10", "3.11", "3.12", "3.13" ] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v5 | |
| - name: Setup Python | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Clear disk space | |
| uses: jlumbroso/[email protected] | |
| with: | |
| dotnet: false | |
| large-packages: false | |
| swap-storage: false | |
| - name: Set swap space | |
| if: runner.os == 'Linux' | |
| uses: pierotofy/[email protected] | |
| with: | |
| swap-size-gb: 12 | |
| - name: Use numba cache to set env variables but not restore cache | |
| uses: ./.github/actions/numba_cache | |
| with: | |
| cache_name: "pytest" | |
| runner_os: ${{ runner.os }} | |
| python_version: ${{ matrix.python-version }} | |
| restore_cache: "false" | |
| - name: Install aeon and dependencies | |
| uses: nick-fields/retry@v3 | |
| with: | |
| timeout_minutes: 30 | |
| max_attempts: 3 | |
| command: python -m pip install .[all_extras,dev] | |
| - name: Show dependencies | |
| run: python -m pip list | |
| - name: Run tests | |
| run: python -m pytest -n logical | |
| - name: Save new cache | |
| uses: actions/cache/save@v4 | |
| with: | |
| path: ${{ github.workspace }}/.numba_cache | |
| # Save cache with the current date (ENV set in numba_cache action) | |
| key: numba-pytest-${{ runner.os }}-${{ matrix.python-version}}-${{ env.CURRENT_DATE }} | |
| doctests: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v5 | |
| - name: Setup Python 3.12 | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.12" | |
| - name: Use numba cache to set env variables but not restore cache | |
| uses: ./.github/actions/numba_cache | |
| with: | |
| cache_name: "doctests" | |
| runner_os: ${{ runner.os }} | |
| python_version: "3.12" | |
| restore_cache: "false" | |
| - name: Install aeon and dependencies | |
| uses: nick-fields/retry@v3 | |
| with: | |
| timeout_minutes: 30 | |
| max_attempts: 3 | |
| command: python -m pip install .[all_extras,dev] | |
| - name: Show dependencies | |
| run: python -m pip list | |
| - name: Run tests | |
| run: python -m pytest -n logical --doctest-only --doctest-continue-on-failure | |
| - name: Save new cache | |
| uses: actions/cache/save@v4 | |
| with: | |
| path: ${{ github.workspace }}/.numba_cache | |
| # Save cache with the current date (ENV set in numba_cache action) | |
| key: numba-doctests-${{ runner.os }}-3.12-${{ env.CURRENT_DATE }} | |
| multithreaded-estimators: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v5 | |
| - name: Setup Python 3.12 | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.12" | |
| - name: Use numba cache to set env variables but not restore cache | |
| uses: ./.github/actions/numba_cache | |
| with: | |
| cache_name: "multithreaded-estimators" | |
| runner_os: ${{ runner.os }} | |
| python_version: "3.12" | |
| restore_cache: "false" | |
| - name: Install aeon and dependencies | |
| uses: nick-fields/retry@v3 | |
| with: | |
| timeout_minutes: 30 | |
| max_attempts: 3 | |
| command: python -m pip install .[all_extras,dev] | |
| - name: Show dependencies | |
| run: python -m pip list | |
| - name: Run tests | |
| run: python -m pytest aeon/testing/tests/ --enablethreading true -k "check_estimator_multithreading" | |
| - name: Save new cache | |
| uses: actions/cache/save@v4 | |
| with: | |
| path: ${{ github.workspace }}/.numba_cache | |
| # Save cache with the current date (ENV set in numba_cache action) | |
| key: numba-multithreaded-estimators-${{ runner.os }}-3.12-${{ env.CURRENT_DATE }} | |
| codecov: | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v5 | |
| - name: Setup Python 3.12 | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.12" | |
| - name: Disable Numba JIT | |
| run: echo "NUMBA_DISABLE_JIT=1" >> $GITHUB_ENV | |
| - name: Install aeon and dependencies | |
| uses: nick-fields/retry@v3 | |
| with: | |
| timeout_minutes: 30 | |
| max_attempts: 3 | |
| command: python -m pip install .[all_extras,unstable_extras,dev] | |
| - name: Show dependencies | |
| run: python -m pip list | |
| - name: Run tests | |
| run: python -m pytest -n logical --cov=aeon --cov-report=xml --timeout 1800 | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v5 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |