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Enable running builds with alternative PHENIO #44

@caufieldjh

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@caufieldjh

Re: conversation with @matentzn on April 1:
We would like to be able to use alternative versions of PHENIO in automate-pheno-comparisons for evaluation, e.g., PHENIO with development version of Upheno.
These should be run in a manner identical to that as that in the current Jenkins pipeline, with the following modifications:

  • Provide a flag to use an alternative PHENIO source.
  • If the flag is set, retrieve the alternative PHENIO from a specified URL.
    This URL will need to point to a gzipped semsql version of PHENIO, identical in format to that of https://s3.amazonaws.com/bbop-sqlite/phenio.db.gz .
    The alternative PHENIO version will need to have its own versionIRI distinct from that of the "production" build.
  • Upload the results to KG-Hub in their own directory, named using the versionIRI.

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