Problem regenerating the graph

[dgarijo]

After several hours retrieving information from Zenodo, I got the following error:

doing recursive search                                              [38/1907]
Traceback (most recent call last):                                           
  File "/usr/local/lib/python3.6/runpy.py", line 193, in _run_module_as_main 
    "__main__", mod_spec)                                                    
  File "/usr/local/lib/python3.6/runpy.py", line 85, in _run_code            
    exec(code, run_globals)                                                  
  File "/sosen/sosen/__main__.py", line 142, in <module>                     
    cli()                                                                    
  File "/usr/local/lib/python3.6/site-packages/click/core.py", line 829, in _
_call__                                                                      
    return self.main(*args, **kwargs)                                        
  File "/usr/local/lib/python3.6/site-packages/click/core.py", line 782, in m
ain                                                                          
    rv = self.invoke(ctx)                                                    
  File "/usr/local/lib/python3.6/site-packages/click/core.py", line 1259, in 
invoke                                                                       
    return _process_result(sub_ctx.command.invoke(sub_ctx))                  
  File "/usr/local/lib/python3.6/site-packages/click/core.py", line 1066, in 
invoke                                                                       
    return ctx.invoke(self.callback, **ctx.params)                           
  File "/usr/local/lib/python3.6/site-packages/click/core.py", line 610, in i
nvoke                                                                        
    return callback(*args, **kwargs)                                         
  File "/sosen/sosen/__main__.py", line 66, in scrape                        
    run_scrape(**kwargs)                                                     
  File "/sosen/sosen/cli.py", line 46, in run_scrape                         
    for dict_obj in data_and_urls:
  File "/sosen/sosen/cli.py", line 41, in <genexpr>
    data_and_urls = (get_zenodo_data(query) for query in queries)
  File "/sosen/sosen/get_data.py", line 100, in get_zenodo_data
    children_data = get_zenodo_data(f"conceptrecid:\"{conceptrecid}\"", recur
sive=False)
  File "/sosen/sosen/get_data.py", line 55, in get_zenodo_data
    'Accept': "application/vnd.zenodo.v1+json"
  File "/sosen/sosen/get_data.py", line 11, in zenodo_get
    data = response.json()
return callback(*args, **kwargs)                                         
  File "/sosen/sosen/__main__.py", line 66, in scrape                        
    run_scrape(**kwargs)                                                     
  File "/sosen/sosen/cli.py", line 46, in run_scrape                         
    for dict_obj in data_and_urls:
  File "/sosen/sosen/cli.py", line 41, in <genexpr>
    data_and_urls = (get_zenodo_data(query) for query in queries)
  File "/sosen/sosen/get_data.py", line 100, in get_zenodo_data
    children_data = get_zenodo_data(f"conceptrecid:\"{conceptrecid}\"", recur
sive=False)
  File "/sosen/sosen/get_data.py", line 55, in get_zenodo_data
    'Accept': "application/vnd.zenodo.v1+json"
  File "/sosen/sosen/get_data.py", line 11, in zenodo_get
    data = response.json()
  File "/usr/local/lib/python3.6/site-packages/requests/models.py", line 898,
 in json
    return complexjson.loads(self.text, **kwargs)
  File "/usr/local/lib/python3.6/json/__init__.py", line 354, in loads
    return _default_decoder.decode(s)
  File "/usr/local/lib/python3.6/json/decoder.py", line 339, in decode
    obj, end = self.raw_decode(s, idx=_w(s, 0).end())
  File "/usr/local/lib/python3.6/json/decoder.py", line 357, in raw_decode
    raise JSONDecodeError("Expecting value", s, err.value) from None
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)

No new data were saved

Command run:

python -m sosen scrape --all -g graph_out_new.ttl -k keywords_out_new.ttl -t 0.85 -d somef_cache.json -c zenodo_cache.json