linting with ruff

Author: LCrossman

.gitignore

@@ -12,7 +12,8 @@ Cargo.lock
 
 # MSVC Windows builds of rustc generate these, which store debugging information
 *.pdb
-
+.pytest-cache
+.ruff-cache
 # RustRover
 #  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
 #  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore

microbiorust-py/benchmarks/bench_pipeline.py

@@ -87,7 +87,7 @@ def track_energy(self, engine, context):
               tracker = OfflineEmissionsTracker(measure_power_secs=0.1, log_level="CRITICAL", country_iso_code="USA")
               tracker.start()
 
-              result = None
+              #result = None
               try:
                    self._run_repeatedly(engine, context, iterations)
               finally:

microbiorust-py/benchmarks/bp_equivalent_gbktofaacount.py

@@ -1,5 +1,4 @@
 import sys
-import os
 from Bio import SeqIO
 
 def main():

microbiorust-py/bp_gbk2faa.py

@@ -1,7 +1,6 @@
 #!/usr/bin/env python3
 
 from Bio import SeqIO
-from Bio.Seq import Seq
 
 
 genbank_file = open("Rhiz3841.gbk.gb",'r')

microbiorust-py/tests/test_mbr.py

@@ -1,7 +1,5 @@
 import os
-import tempfile
 import textwrap
-from pathlib import Path
 
 import microbiorust
 import pytest