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altering import statement in the bench pipeline to new format
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Lines changed: 2 additions & 2 deletions

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microbiorust-py/benchmarks/bench_pipeline.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@
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import time
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import subprocess
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from Bio import SeqIO
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import microbiorust
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from microbiorust import gbk
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class PipelineSuite:
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"""
@@ -56,7 +56,7 @@ def _run_logic(self, engine, context):
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"""Routes execution based on the current benchmark parameter."""
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if context == 'interactive':
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if engine == 'rust':
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return microbiorust.gbk_to_faa_count(self.filepath)
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return gbk.gbk_to_faa_count(self.filepath)
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else:
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# Industry standard BioPython streaming approach
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count = 0

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