11<img src =" assets/MICROBIO B.svg#gh-light-mode-only " alt =" microBioRust logo light mode " width =" 200 " >
22<img src =" assets/BIO W.png#gh-dark-mode-only " alt =" microBioRust logo dark mode " width =" 200 " >
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4- [ ![ Docs] ( https://img.shields.io/badge/docs-mkdocs-blue.svg )] ( https://lcrossman.github.io/microBioRust-docs/ )
4+ [ ![ Docs] ( https://img.shields.io/badge/docs-mkdocs-blue.svg )] ( https://lcrossman.github.io/microBioRust-docs )
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6- ![ Crates.io Version] ( https://img.shields.io/crates/v/microBioRust?style=flat&link= https%3A%2F%2Fcrates .io%2Fcrates%2FmicroBioRust )
6+ [ ![ Crates.io Version] ( https://img.shields.io/crates/v/microBioRust?style=flat )] ( https://crates .io/crates/microBioRust )
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8+ See the microbiorust-py benchmarks with airspeed velocity:
9+ [ ![ Benchmarks] ( https://img.shields.io/badge/benchmarks-passing-brightgreen )] ( https://lcrossman.github.io/microBioRust/ )
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911## A Rust bioinformatics crate aimed at Microbial genomics<br >
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1113The aim of this crate is to provide Microbiology friendly Rust functions for bioinformatics.<br >
1214
13- > Very much under construction!<br >
14-
1515Some concepts with many thanks to Rust-bio<br >
1616Please see the Roadmap for futher details [ here] ( ROADMAP.md )
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@@ -25,9 +25,9 @@ Questions and comments - please join the Discord server :) [here](https://discor
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2626Currently there is functionality for:<br >
2727````
28- 1. A Genbank to GFF parser
28+ 1. A Genbank parser and conversions to GFF, protein fasta (faa), DNA sequence (.fna), Gene sequence (.ffn) parser, JSON
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30- 2. An Embl to GFF and GBK parser
30+ 2. An Embl parser and conversions to GFF or GBK , .faa, .fna, .ffn, JSON
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3232 3. Parsing of multiple sequence alignments
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